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Sed0003950 (gene) of Chayote v1 genome

Gene IDSed0003950
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG07:5004630..5004821
RNA-Seq ExpressionSed0003950
SyntenySed0003950
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018419.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1166.67Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME    ACA +  AAA +AV  +DES SPAAAPGPSS AS ALP+LGSL+GASL+SF+AY+LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
XP_022980143.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.9e-1065.08Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME    AC  +  AAA +AV  +DES SPAAAPGPSS AS ALP+LGSL+GASL+SF+AY+LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.4e-1066.67Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K ACA +  AA  +AV  +DES SPAAAPGPSS AS ALP+LGSLVGASL+SF+AY  N
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]4.9e-1166.67Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME    ACA +  AAA +AV  +DES SPAAAPGPSS AS ALP+LGSL+GASL+SF+AY+LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]6.4e-1168.25Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K ACA +  AAA S+   ADES SPAAAPGPSS AS ALP+LGSLVGASL++F+AY LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)3.9e-0659.68Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYIL
        M+  K +CA +V AA+ SAV  +D+  SPA APGPSS AS ALP  GSLVGAS++SF AY L
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYIL
A0A6J1F3F5 arabinogalactan peptide 23-like1.7e-0963.49Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K ACA +  AA  +AV  +DES SPAAAPGPSS AS  LP+LGSLVGASL+S +AY  N
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
A0A6J1H8I1 arabinogalactan peptide 23-like2.6e-1065.08Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K ACA +  AA  +AV  +DES SPAAAPGPSS AS ALP+LGSLVGASL+SF+A+  N
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
A0A6J1IYE9 arabinogalactan peptide 23-like9.0e-1165.08Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME    AC  +  AAA +AV  +DES SPAAAPGPSS AS ALP+LGSL+GASL+SF+AY+LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
A0A6J1KX42 arabinogalactan peptide 23-like1.2e-1066.67Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K ACA +  AA  +AV  +DES SPAAAPGPSS AS ALP+LGSLVGASL+SF+AY  N
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.6e-0753.97Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K AC  +  AA+ +AV  A+E  +P  APGP+S AS ALP+LGSLVGASL+S  +Y L+
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.3e-0653.12Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGP-SSPASTALPSLGSLVGASLISFIAYILN
        ME  K AC  +  AA+ +AV  A+     A APGP +S AS A+P+LGSLVGASL+S  AY LN
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGP-SSPASTALPSLGSLVGASLISFIAYILN
AT3G57690.1 arabinogalactan protein 231.8e-0853.97Show/hide
Query:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN
        ME  K AC  +  AA+ +AV  A+E  +P  APGP+S AS ALP+LGSLVGASL+S  +Y L+
Subjt:  MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCAACAAGTTTGCCTGTGCCACCATCGTCGTAGCCGCTGCCTTTAGCGCAGTCGCAGTTGCCGATGAGTCTTTCTCTCCCGCTGCTGCACCGGGGCCGAGCAG
CCCGGCCTCCACCGCACTTCCCTCCCTTGGATCGCTCGTTGGTGCCTCGCTTATTTCATTTATAGCCTACATTTTGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCAACAAGTTTGCCTGTGCCACCATCGTCGTAGCCGCTGCCTTTAGCGCAGTCGCAGTTGCCGATGAGTCTTTCTCTCCCGCTGCTGCACCGGGGCCGAGCAG
CCCGGCCTCCACCGCACTTCCCTCCCTTGGATCGCTCGTTGGTGCCTCGCTTATTTCATTTATAGCCTACATTTTGAACTAA
Protein sequenceShow/hide protein sequence
MEFNKFACATIVVAAAFSAVAVADESFSPAAAPGPSSPASTALPSLGSLVGASLISFIAYILN