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Sed0003966 (gene) of Chayote v1 genome

Gene IDSed0003966
OrganismSechium edule (Chayote v1)
DescriptionLipid transfer protein
Genome locationLG03:8120212..8122363
RNA-Seq ExpressionSed0003966
SyntenySed0003966
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily
IPR043325 - Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015653.1 hypothetical protein SDJN02_23290 [Cucurbita argyrosperma subsp. argyrosperma]6.8e-3260.56Show/hide
Query:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC
        +SV   AVAVV V+   GFVEAQ   PDCASKL +C +FL S NPPATCCNPIKE VATQLDCLCNLYTS    SSIG+NV+DAL LTKACGV  DLS C
Subjt:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC

Query:  NKTSSVPAPKQGSTPAGNDAEKL-VFTGFASLLLLLASLILY
           +  PAP  GS    + A  L    GF  LLL   SL+ Y
Subjt:  NKTSSVPAPKQGSTPAGNDAEKL-VFTGFASLLLLLASLILY

TYK19484.1 non-specific lipid-transfer protein 1 [Cucumis melo var. makuwa]1.4e-3260.4Show/hide
Query:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDL
        R +ISV  A VAVV ++   GFVEAQ  VPDC SKLT C  FL S NPPATCC+PIKE VATQL CLCNLY T G L+S G+NV+DA+ LT ACGV  +L
Subjt:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDL

Query:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY
        S C   +  PAP+QG  S P   GNDA+K   TG  SL+LL LASL++Y
Subjt:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY

XP_004147939.1 lipid transfer-like protein VAS [Cucumis sativus]3.1e-3258.78Show/hide
Query:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL
        R +ISV ++ VAVV ++    F+EAQ  VPDC SKLTSC  FL S NPPATCC+PIKE VATQL CLCNLYT+ G L+S G+NV DA+ LT ACGV  +L
Subjt:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL

Query:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY
        S C   +  PAP+QG  S P   GN AEK   TG  SLL+ LASL  Y
Subjt:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY

XP_022965217.1 non-specific lipid transfer protein-like 1 [Cucurbita maxima]2.0e-3160.84Show/hide
Query:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC
        +SV + AVAV  V+   GFVEAQ   PDCASKL  C  FL S NPPATCCNPIKE VATQLDCLCNLYTS    SSIG+NV+DAL LTKACGV+TDLS C
Subjt:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC

Query:  NKTSSVPAPKQG--STPAGNDAEKLVFTGFASLLLLLASLILY
           +  PAP  G  S PAG         GF  LLL   SL+ Y
Subjt:  NKTSSVPAPKQG--STPAGNDAEKLVFTGFASLLLLLASLILY

XP_038876834.1 non-specific lipid transfer protein GPI-anchored 8 [Benincasa hispida]1.1e-3764.86Show/hide
Query:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL
        RS++SVA+A VAVV V+    FVEAQ+  PDCASKL  C  FL S NPPATCC+PIKE VATQL+CLCNLY+S   LSSIG+NV+DAL LTKACGV  +L
Subjt:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL

Query:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY
        S C   +  PAP+QG  S PA  GNDAEKLV TGF S+LL LA L+ Y
Subjt:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY

TrEMBL top hitse value%identityAlignment
A0A0A0L702 AAI domain-containing protein1.5e-3258.78Show/hide
Query:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL
        R +ISV ++ VAVV ++    F+EAQ  VPDC SKLTSC  FL S NPPATCC+PIKE VATQL CLCNLYT+ G L+S G+NV DA+ LT ACGV  +L
Subjt:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDL

Query:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY
        S C   +  PAP+QG  S P   GN AEK   TG  SLL+ LASL  Y
Subjt:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLLLASLILY

A0A1S3BK67 non-specific lipid-transfer protein 11.3e-3160.54Show/hide
Query:  DISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDLST
        +ISV  A VAVV +    GFVEAQ  VPDC SKLT C  FL S NPPATCC+PIKE VATQL CLCNLY T G L+S G+NV+DA+ LT ACGV  +LS 
Subjt:  DISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDLST

Query:  CNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY
        C   +  PAP+QG  S P   GNDA+K   TG  SL+LL LASL++Y
Subjt:  CNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY

A0A5D3D7F6 Non-specific lipid-transfer protein 16.6e-3360.4Show/hide
Query:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDL
        R +ISV  A VAVV ++   GFVEAQ  VPDC SKLT C  FL S NPPATCC+PIKE VATQL CLCNLY T G L+S G+NV+DA+ LT ACGV  +L
Subjt:  RSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDL

Query:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY
        S C   +  PAP+QG  S P   GNDA+K   TG  SL+LL LASL++Y
Subjt:  STCNKTSSVPAPKQG--STPA--GNDAEKLVFTGFASLLLL-LASLILY

A0A6J1EBU7 non-specific lipid transfer protein-like 11.3e-3160.87Show/hide
Query:  IAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS
        ++ VAVV V+   GFVEAQ   PDCASKL SC +FL S NPPATCCNPIKE VATQLDCLCNLYTS    SSIG+NV+DAL LTKACGV  DLS C   +
Subjt:  IAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS

Query:  SVPAPKQGSTPAGNDAEKL-VFTGFASLLLLLASLILY
          PAP  GS    + A  L    GF  LLL   SL+ Y
Subjt:  SVPAPKQGSTPAGNDAEKL-VFTGFASLLLLLASLILY

A0A6J1HJR7 non-specific lipid transfer protein-like 19.6e-3260.84Show/hide
Query:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC
        +SV + AVAV  V+   GFVEAQ   PDCASKL  C  FL S NPPATCCNPIKE VATQLDCLCNLYTS    SSIG+NV+DAL LTKACGV+TDLS C
Subjt:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC

Query:  NKTSSVPAPKQG--STPAGNDAEKLVFTGFASLLLLLASLILY
           +  PAP  G  S PAG         GF  LLL   SL+ Y
Subjt:  NKTSSVPAPKQG--STPAGNDAEKLVFTGFASLLLLLASLILY

SwissProt top hitse value%identityAlignment
B3H587 Non-specific lipid transfer protein GPI-anchored 83.9e-0628.17Show/hide
Query:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYT-SGALSSIGINVADALRLTKACGVSTDLST
        + V    V +  V   A F         C +KL  C  +++ S  PP  CCNP+K+     + CLC  +     L  + +   +A+++  +CG++ D S 
Subjt:  ISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYT-SGALSSIGINVADALRLTKACGVSTDLST

Query:  CNKTS-SVPAPKQGSTPAGND-------AEKLVFTGFASLLL
        CNKT+ S PA    +  +GN        A  + F GF+ + L
Subjt:  CNKTS-SVPAPKQGSTPAGND-------AEKLVFTGFASLLL

Q1G2Y5 Non-specific lipid transfer protein GPI-anchored 212.3e-0635.87Show/hide
Query:  PDCASKLTSCGQFL--NSTNPPATCCNPIKETVATQLDCLCNLYTSGALSSIGINVADALRLTKACGVSTDLSTCNKTSSVPAPKQGSTPAG
        P   S +T C  FL    + P + CC  +K    T +DCLC + T+G   SI IN   A+ L +ACG+      C K S+ P P  G    G
Subjt:  PDCASKLTSCGQFL--NSTNPPATCCNPIKETVATQLDCLCNLYTSGALSSIGINVADALRLTKACGVSTDLSTCNKTSSVPAPKQGSTPAG

Q1PFD8 Non-specific lipid transfer protein GPI-anchored 91.7e-0931.97Show/hide
Query:  MPLRSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTN--PPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACG
        M +   ++V +A V +  V A A     Q+    C  KL  C  +++S N  PP +CC P+KE V     CLC  + +   L ++ +   +AL L KACG
Subjt:  MPLRSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTN--PPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACG

Query:  VSTDLSTCNKTSS-VPAPKQGSTPAGNDAEKLVFTGFASLLLLLASL
        V+ D+S C+K ++  P    GST   + A  + F  F+ L   +A +
Subjt:  VSTDLSTCNKTSS-VPAPKQGSTPAGNDAEKLVFTGFASLLLLLASL

Q6NLF7 Non-specific lipid transfer protein GPI-anchored 72.4e-1136.99Show/hide
Query:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS
        AA   V  +     +EAQ    +C SKL  C   LN+T  P   CC+ IKE V  +L CLC +YTS G L+   +    AL L++ C V+TDLS C    
Subjt:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS

Query:  SVPAPKQG---STPAGND------AEKLVFTGFASLLLLLASLILY
          P+PK       PAGN         KL   G  +++L L S I +
Subjt:  SVPAPKQG---STPAGND------AEKLVFTGFASLLLLLASLILY

Q9LE56 Non-specific lipid transfer protein GPI-anchored 36.4e-0936.57Show/hide
Query:  AVAVVFVIAGAGFVEAQMPVP------------DCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGV
        AVAVV V        AQM  P             C  KL  C  +L+ +T PPATCC P+ E VA    CLC ++ +   L S+ +   +AL L KACG 
Subjt:  AVAVVFVIAGAGFVEAQMPVP------------DCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGV

Query:  STDLSTC------NKTSSVPA----PKQGSTPAG
          D+S C      N +S+ PA    P   ST  G
Subjt:  STDLSTC------NKTSSVPA----PKQGSTPAG

Arabidopsis top hitse value%identityAlignment
AT1G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein4.6e-1036.57Show/hide
Query:  AVAVVFVIAGAGFVEAQMPVP------------DCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGV
        AVAVV V        AQM  P             C  KL  C  +L+ +T PPATCC P+ E VA    CLC ++ +   L S+ +   +AL L KACG 
Subjt:  AVAVVFVIAGAGFVEAQMPVP------------DCASKLTSCGQFLN-STNPPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGV

Query:  STDLSTC------NKTSSVPA----PKQGSTPAG
          D+S C      N +S+ PA    P   ST  G
Subjt:  STDLSTC------NKTSSVPA----PKQGSTPAG

AT1G62790.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.7e-1236.99Show/hide
Query:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS
        AA   V  +     +EAQ    +C SKL  C   LN+T  P   CC+ IKE V  +L CLC +YTS G L+   +    AL L++ C V+TDLS C    
Subjt:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTCNKTS

Query:  SVPAPKQG---STPAGND------AEKLVFTGFASLLLLLASLILY
          P+PK       PAGN         KL   G  +++L L S I +
Subjt:  SVPAPKQG---STPAGND------AEKLVFTGFASLLLLLASLILY

AT1G62790.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.7e-1236.81Show/hide
Query:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC----
        AA   V  +     +EAQ    +C SKL  C   LN+T  P   CC+ IKE V  +L CLC +YTS G L+   +    AL L++ C V+TDLS C    
Subjt:  AAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPA-TCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACGVSTDLSTC----

Query:  --NKTSSVPAPKQGSTPAGNDA-EKLVFTGFASLLLLLASLILY
          +  +S+P P  G+T     A  KL   G  +++L L S I +
Subjt:  --NKTSSVPAPKQGSTPAGNDA-EKLVFTGFASLLLLLASLILY

AT1G70250.1 receptor serine/threonine kinase, putative4.4e-1341.35Show/hide
Query:  AVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPAT-CCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDLSTCNKTSS
        A+ +  V+     VEAQ    +C SK+  C +FLN+T  P+T CCN IKE +     CLC +Y T G L+   I    AL L   CGV+TDLS C+ + +
Subjt:  AVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPAT-CCNPIKETVATQLDCLCNLY-TSGALSSIGINVADALRLTKACGVSTDLSTCNKTSS

Query:  VPAP
         P P
Subjt:  VPAP

AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.2e-1031.97Show/hide
Query:  MPLRSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTN--PPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACG
        M +   ++V +A V +  V A A     Q+    C  KL  C  +++S N  PP +CC P+KE V     CLC  + +   L ++ +   +AL L KACG
Subjt:  MPLRSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTN--PPATCCNPIKETVATQLDCLCNLYTS-GALSSIGINVADALRLTKACG

Query:  VSTDLSTCNKTSS-VPAPKQGSTPAGNDAEKLVFTGFASLLLLLASL
        V+ D+S C+K ++  P    GST   + A  + F  F+ L   +A +
Subjt:  VSTDLSTCNKTSS-VPAPKQGSTPAGNDAEKLVFTGFASLLLLLASL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTTCGCAGCGATATTTCCGTCGCCATCGCCGCCGTCGCGGTGGTTTTCGTGATCGCAGGCGCCGGATTCGTGGAGGCGCAGATGCCGGTGCCGGACTGCGCTTC
GAAGCTAACATCGTGCGGTCAGTTTCTGAACTCCACTAATCCGCCGGCGACGTGCTGCAATCCGATCAAGGAAACGGTGGCGACGCAGCTGGATTGCCTGTGCAACCTCT
ACACGTCGGGCGCGTTGTCGTCGATCGGTATTAATGTCGCCGACGCTCTTCGTCTCACTAAAGCTTGCGGCGTCTCCACCGATCTATCCACCTGCAACAAAACTTCTTCT
GTTCCGGCTCCGAAACAAGGTTCTACGCCCGCCGGAAATGATGCAGAAAAACTTGTATTCACTGGATTTGCATCTCTACTCTTGCTCTTGGCCTCCCTAATCCTTTATTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTTCGCAGCGATATTTCCGTCGCCATCGCCGCCGTCGCGGTGGTTTTCGTGATCGCAGGCGCCGGATTCGTGGAGGCGCAGATGCCGGTGCCGGACTGCGCTTC
GAAGCTAACATCGTGCGGTCAGTTTCTGAACTCCACTAATCCGCCGGCGACGTGCTGCAATCCGATCAAGGAAACGGTGGCGACGCAGCTGGATTGCCTGTGCAACCTCT
ACACGTCGGGCGCGTTGTCGTCGATCGGTATTAATGTCGCCGACGCTCTTCGTCTCACTAAAGCTTGCGGCGTCTCCACCGATCTATCCACCTGCAACAAAACTTCTTCT
GTTCCGGCTCCGAAACAAGGTTCTACGCCCGCCGGAAATGATGCAGAAAAACTTGTATTCACTGGATTTGCATCTCTACTCTTGCTCTTGGCCTCCCTAATCCTTTATTA
G
Protein sequenceShow/hide protein sequence
MPLRSDISVAIAAVAVVFVIAGAGFVEAQMPVPDCASKLTSCGQFLNSTNPPATCCNPIKETVATQLDCLCNLYTSGALSSIGINVADALRLTKACGVSTDLSTCNKTSS
VPAPKQGSTPAGNDAEKLVFTGFASLLLLLASLILY