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Sed0003969 (gene) of Chayote v1 genome

Gene IDSed0003969
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich protein 5-like
Genome locationLG13:4416542..4417556
RNA-Seq ExpressionSed0003969
SyntenySed0003969
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577050.1 hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2265.35Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK    PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T+++N+GGG GGG G
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG

Query:  ---GGGDGSGGDGCGGGC-GGC-GGCG
           GGGDG GG GCGGGC GGC GGCG
Subjt:  ---GGGDGSGGDGCGGGC-GGC-GGCG

KGN53550.1 hypothetical protein Csa_015259 [Cucumis sativus]3.2e-1657.81Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ---DIKNGGMTILAGAGVGLAAADVITTISNEGGGDGG
        MKTYAIVLI  GSVI AV++L C+CK+   +KK T T          + +PQ  N D+ERGQ   +  NGGMTIL GA  GLA A V+TT+S+ GGG GG
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ---DIKNGGMTILAGAGVGLAAADVITTISNEGGGDGG

Query:  --GDGGGGDGSGGDGCGGGCGGC-GGCG
          G GG GDG GG GCGGGCGGC GGCG
Subjt:  --GDGGGGDGSGGDGCGGGCGGC-GGCG

XP_022931328.1 glycine-rich protein 5-like [Cucurbita moschata]6.0e-2365.62Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNE-GGGDGGGD
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK    PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T+++N+ GGG GGG+
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNE-GGGDGGGD

Query:  GGGGDGSGGD---GCGGGC-GGC-GGCG
         GGGDGSGGD   GCGGGC GGC GGCG
Subjt:  GGGGDGSGGD---GCGGGC-GGC-GGCG

XP_022985127.1 glycine-rich protein 5-like [Cucurbita maxima]1.6e-2366.14Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK T  PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T++SN+GGG GGG  
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG

Query:  GGGDGSGGD---GCGGGC-GGC-GGCG
        GG DG GGD   GCGGGC GGC GGCG
Subjt:  GGGDGSGGD---GCGGGC-GGC-GGCG

XP_023552868.1 glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo]3.2e-2466.14Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK    PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T++SN+GGG GGG+ 
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG

Query:  GGGDGSGGD---GCGGGC-GGC-GGCG
        GGGDG GGD   GCGGGC GGC GGCG
Subjt:  GGGDGSGGD---GCGGGC-GGC-GGCG

TrEMBL top hitse value%identityAlignment
A0A0A0KVE1 Uncharacterized protein1.5e-1657.81Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ---DIKNGGMTILAGAGVGLAAADVITTISNEGGGDGG
        MKTYAIVLI  GSVI AV++L C+CK+   +KK T T          + +PQ  N D+ERGQ   +  NGGMTIL GA  GLA A V+TT+S+ GGG GG
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ---DIKNGGMTILAGAGVGLAAADVITTISNEGGGDGG

Query:  --GDGGGGDGSGGDGCGGGCGGC-GGCG
          G GG GDG GG GCGGGCGGC GGCG
Subjt:  --GDGGGGDGSGGDGCGGGCGGC-GGCG

A0A2G9HGH5 Uncharacterized protein2.2e-1551.43Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQD-----IKNGGMTILAGAGVGLAAADV-ITTISNE---
        MK YA+VLI +GS+ A ++LLCCLC   GRKKK       +A A R    PQP+ RD+E+G++     +KNGGM +L GAG  +AA  V    ISN    
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQD-----IKNGGMTILAGAGVGLAAADV-ITTISNE---

Query:  --GGGDGGGDGGGGDGSGGDGC-------GGGCGGCGGCG
          GGG GGGDGGGG G  G GC       GGGCGGCGGCG
Subjt:  --GGGDGGGDGGGGDGSGGDGC-------GGGCGGCGGCG

A0A2Z7BIQ3 Loricrin-like6.1e-1353.85Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ-----DIKNGGMTILAGAGVGLAAADVITTISNEGGGD
        MK Y IVLIT GSV AA+++LCCLC   GRKK+  T     ATA      P+ +NRD+ERG+       K+GGM IL GA  G A A    ++ + GGG 
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQ-----DIKNGGMTILAGAGVGLAAADVITTISNEGGGD

Query:  GGGDGGGGDGSG-GDGCG--GGCGGCGGCG
        GGG  GGGDG G G GCG  GGCGGCGGCG
Subjt:  GGGDGGGGDGSG-GDGCG--GGCGGCGGCG

A0A6J1EY84 glycine-rich protein 5-like2.9e-2365.62Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNE-GGGDGGGD
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK    PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T+++N+ GGG GGG+
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNE-GGGDGGGD

Query:  GGGGDGSGGD---GCGGGC-GGC-GGCG
         GGGDGSGGD   GCGGGC GGC GGCG
Subjt:  GGGGDGSGGD---GCGGGC-GGC-GGCG

A0A6J1J409 glycine-rich protein 5-like7.7e-2466.14Show/hide
Query:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG
        M+TYAIVLIT G VIA+ V+L C+C Y GRKKK T  PTYT++AL  RP+P+P +RDLE G + KNGGMTILAGA  GLA A V+T++SN+GGG GGG  
Subjt:  MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDG

Query:  GGGDGSGGD---GCGGGC-GGC-GGCG
        GG DG GGD   GCGGGC GGC GGCG
Subjt:  GGGDGSGGD---GCGGGC-GGC-GGCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G53620.1 unknown protein1.8e-0441.94Show/hide
Query:  MKTYAIVLITIGS-VIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERG-QDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGG
        M+    V+I +G+ VI  + ++CC+   + RKK+               P  QP  RDLE G   IK+GG+ +L G  V  A      T    GG  GGG
Subjt:  MKTYAIVLITIGS-VIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERG-QDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGG

Query:  DGGGGDGSGGDGCGGGCGGCGGCG
        DGGG DG  G G GGGCGGCGGCG
Subjt:  DGGGGDGSGGDGCGGGCGGCGGCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACATACGCCATAGTTCTCATTACTATAGGCTCTGTAATAGCAGCTGTGGTGCTTTTGTGTTGTCTTTGCAAGTATACGGGTCGTAAAAAGAAAAACACGACAAC
ACCCACATACACAGCTACTGCTCTGAGGTGGAGGCCGTCACCGCAACCGATGAACCGTGATCTCGAACGCGGGCAAGATATCAAGAATGGTGGCATGACTATTCTGGCTG
GAGCTGGTGTTGGTTTAGCTGCTGCAGATGTGATTACTACTATTAGCAATGAAGGAGGAGGGGATGGGGGAGGAGACGGAGGCGGAGGTGATGGCAGTGGCGGTGACGGT
TGCGGTGGCGGTTGTGGTGGCTGTGGTGGTTGTGGAGTCGCAACGTTGCCCGAAAATAACGTTGTTGCATGTGGAGACGCCAATGGGGAAAGGAAAACACGCACACGATA
CTCAGGTGTTGTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACATACGCCATAGTTCTCATTACTATAGGCTCTGTAATAGCAGCTGTGGTGCTTTTGTGTTGTCTTTGCAAGTATACGGGTCGTAAAAAGAAAAACACGACAAC
ACCCACATACACAGCTACTGCTCTGAGGTGGAGGCCGTCACCGCAACCGATGAACCGTGATCTCGAACGCGGGCAAGATATCAAGAATGGTGGCATGACTATTCTGGCTG
GAGCTGGTGTTGGTTTAGCTGCTGCAGATGTGATTACTACTATTAGCAATGAAGGAGGAGGGGATGGGGGAGGAGACGGAGGCGGAGGTGATGGCAGTGGCGGTGACGGT
TGCGGTGGCGGTTGTGGTGGCTGTGGTGGTTGTGGAGTCGCAACGTTGCCCGAAAATAACGTTGTTGCATGTGGAGACGCCAATGGGGAAAGGAAAACACGCACACGATA
CTCAGGTGTTGTTGGTTAA
Protein sequenceShow/hide protein sequence
MKTYAIVLITIGSVIAAVVLLCCLCKYTGRKKKNTTTPTYTATALRWRPSPQPMNRDLERGQDIKNGGMTILAGAGVGLAAADVITTISNEGGGDGGGDGGGGDGSGGDG
CGGGCGGCGGCGVATLPENNVVACGDANGERKTRTRYSGVVG