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Sed0003979 (gene) of Chayote v1 genome

Gene IDSed0003979
OrganismSechium edule (Chayote v1)
Descriptionthylakoid lumenal 16.5 kDa protein, chloroplastic
Genome locationLG11:1107654..1111877
RNA-Seq ExpressionSed0003979
SyntenySed0003979
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
InterPro domainsIPR038862 - Chloroplast thylakoid lumenal protein MPH2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030378.1 Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-6376.38Show/hide
Query:  MAASILSTANSFHSSNP-----FSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDD
        MA S LSTAN+FHSS P      S+SSSSSPLL+SRF CL   NN + LVICK NNDPP +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADDD
Subjt:  MAASILSTANSFHSSNP-----FSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDD

Query:  EELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        EELLEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  EELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

XP_008457444.1 PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo]6.9e-6476.77Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE
        MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP KIP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDE
Subjt:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE

Query:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        ELLEKVK DRKK LE+QGVISSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

XP_022946074.1 thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata]1.2e-6376.5Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADD
        MA S LSTAN+FHSS P S+SSSSS      PLL+SRF CL Y NN + LVICK NNDPP +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADD
Subjt:  MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADD

Query:  DEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        DEELLEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  DEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

XP_023545851.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]1.3e-6277.04Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS--PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEEL
        MA S LSTAN+FHSS P S+SSSSS  PLL+SRF CL   NN + LVICK NNDPP +IPTLTKRSLSI  IS FI  LVG GFS+ANAAILEADDDEEL
Subjt:  MAASILSTANSFHSSNPFSTSSSSS--PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEEL

Query:  LEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        LEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  LEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

XP_038889145.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida]1.2e-6376.62Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS-------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEAD
        MA S LSTAN+FHSS P S+SSSSS       PLL+SRFGCL+ HNN K LVICK  NDPP +IP LTKRSLSI  ISSFI  LVG GFS+ANAAILEAD
Subjt:  MAASILSTANSFHSSNPFSTSSSSS-------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEAD

Query:  DDEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLIS
        DDEELLEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGSSDADWV NANLAF+KLSSS EEKSE DAF SSL SLIS
Subjt:  DDEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLIS

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A0A0LI29 Uncharacterized protein1.8e-6274.26Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS--------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEA
        MA + LSTAN+FHSS P S SSSSS        PL++SRFGCLY HNN K LVICK ++DPP KIP LTKR+LSI  ISSFI  LVG GFS+ANAAILEA
Subjt:  MAASILSTANSFHSSNPFSTSSSSS--------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEA

Query:  DDDEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLI
        DDDEELLEKVK DRKK LE+QGVISSA KE G    L  KLSKVGQAIDN DFSTASSVLGGSSDADWV  AN AF+KLSSS EEKSE DAF SSL SLI
Subjt:  DDDEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLI

Query:  SS
        SS
Subjt:  SS

A0A1S3C541 thylakoid lumenal 16.5 kDa protein, chloroplastic3.3e-6476.77Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE
        MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP KIP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDE
Subjt:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE

Query:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        ELLEKVK DRKK LE+QGVISSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

A0A5A7V8J2 Thylakoid lumenal 16.5 kDa protein3.3e-6476.77Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE
        MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP KIP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDE
Subjt:  MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDE

Query:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        ELLEKVK DRKK LE+QGVISSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  ELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

A0A6J1G2S1 thylakoid lumenal 16.5 kDa protein, chloroplastic5.7e-6476.5Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADD
        MA S LSTAN+FHSS P S+SSSSS      PLL+SRF CL Y NN + LVICK NNDPP +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADD
Subjt:  MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADD

Query:  DEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        DEELLEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS EEKSE DAF SSL SLISS
Subjt:  DEELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

A0A6J1KEL3 thylakoid lumenal 16.5 kDa protein, chloroplastic3.1e-6275.38Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSS-----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDD
        MA S LSTAN+FHSS+P S+SSSSS     PLL+SRF CL   NN +  VICK NNDPP KIP+LTKRSLSI  ISSFI  LVG GFS+ANAAILEADDD
Subjt:  MAASILSTANSFHSSNPFSTSSSSS-----PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDD

Query:  EELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        EELLEKVK DRKK LERQGVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLS+S EEKSE DAF SSL SLISS
Subjt:  EELLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

SwissProt top hitse value%identityAlignment
O22773 Thylakoid lumenal 16.5 kDa protein, chloroplastic8.2e-2846.19Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFS-----EANAAILEADDDEE
        MA S+L ++    + NPF +++ SS    S+   + Y  N K      +            +R LS+  +SS + +GL  +     +ANAAILEADDDEE
Subjt:  MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFS-----EANAAILEADDDEE

Query:  LLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        LLEKVK DRKK +ERQ V++SA+KE G    L  KLSKVGQAI+N D   A  VLG   D +WV   NLAF+KLS+S EE +E +AF SSL SLI+S
Subjt:  LLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS

Arabidopsis top hitse value%identityAlignment
AT4G02530.1 chloroplast thylakoid lumen protein5.8e-2946.19Show/hide
Query:  MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFS-----EANAAILEADDDEE
        MA S+L ++    + NPF +++ SS    S+   + Y  N K      +            +R LS+  +SS + +GL  +     +ANAAILEADDDEE
Subjt:  MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFS-----EANAAILEADDDEE

Query:  LLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS
        LLEKVK DRKK +ERQ V++SA+KE G    L  KLSKVGQAI+N D   A  VLG   D +WV   NLAF+KLS+S EE +E +AF SSL SLI+S
Subjt:  LLEKVKADRKKWLERQGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCATCCATTCTTTCAACAGCAAACTCTTTCCATTCATCCAATCCTTTTTCTACTTCTTCTTCTTCATCACCATTGCTGAAATCAAGATTTGGATGCCTATATTA
CCATAATAACCCTAAGCCACTGGTAATCTGCAAAATAAACAATGACCCACCATACAAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATATCCATCATTTCCAGTTTCA
TTTTGGTGGGTCTAGGGTTTTCAGAAGCAAATGCTGCAATTCTTGAAGCTGATGATGATGAGGAGCTTTTGGAAAAGGTGAAGGCTGATAGAAAGAAGTGGCTTGAAAGA
CAAGGGGTTATCAGTTCTGCTATTAAAGAAACAGGTTTGAAGTTGAAGCTGAGCAAAGTTGGTCAAGCCATTGACAATGAGGACTTCTCAACAGCAAGTTCAGTTCTTGG
GGGTAGTAGTGATGCAGATTGGGTTCTGAACGCCAATTTAGCCTTCTCTAAGCTGAGCTCAAGTTCTGAAGAGAAATCTGAGGCAGATGCATTCAAATCCTCTCTAGTTT
CGTTAATCTCATCAGGTAGGTTTTATTTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCATCCATTCTTTCAACAGCAAACTCTTTCCATTCATCCAATCCTTTTTCTACTTCTTCTTCTTCATCACCATTGCTGAAATCAAGATTTGGATGCCTATATTA
CCATAATAACCCTAAGCCACTGGTAATCTGCAAAATAAACAATGACCCACCATACAAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATATCCATCATTTCCAGTTTCA
TTTTGGTGGGTCTAGGGTTTTCAGAAGCAAATGCTGCAATTCTTGAAGCTGATGATGATGAGGAGCTTTTGGAAAAGGTGAAGGCTGATAGAAAGAAGTGGCTTGAAAGA
CAAGGGGTTATCAGTTCTGCTATTAAAGAAACAGGTTTGAAGTTGAAGCTGAGCAAAGTTGGTCAAGCCATTGACAATGAGGACTTCTCAACAGCAAGTTCAGTTCTTGG
GGGTAGTAGTGATGCAGATTGGGTTCTGAACGCCAATTTAGCCTTCTCTAAGCTGAGCTCAAGTTCTGAAGAGAAATCTGAGGCAGATGCATTCAAATCCTCTCTAGTTT
CGTTAATCTCATCAGGTAGGTTTTATTTTTTTTAGTTCTTTGAGAAATTCGAATTCATGACCTGGTCATAGGCACACACACTTATATCGTTGAACTATTGTTTTTGTTGT
CACCTCTGTTGAGAATTTGGCAAAATATTAACAAAGTTTGTCCCACATGGAAAGTTTTGGCAAAATATTGGGAAAAATGTCCCACATTGGAAAGATGCAAGAATATGGTG
TGCTCCACTCACTATAAAAAGCAAATGGGTTTGGATTCAAGACATCCCAATTAAAATCACTTTAAGCATGTGTACTAACTCTTTTGTATACGAAAGTTGAGCAAAAGTTG
CTATTAGTATAGCTTTGAAGAGTAACTTTTGTAATTTGGGTCTGGAAGAGAATTCTTTGTGATTGTAACAATTTTTCACATAGTAGAAATTCTTTCTTCCCGTGATTTTT
TTCTCCAGTTTGGAGTTTTCCACGTAAATTCTTGTGTTGTTTCGGAAGGTTTTTCCCCAACGATCTCTATCGTTTAGGCTATCTGCTAAGAAATAATGCAGCAGCC
Protein sequenceShow/hide protein sequence
MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFSEANAAILEADDDEELLEKVKADRKKWLER
QGVISSAIKETGLKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISSGRFYFF