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Sed0004004 (gene) of Chayote v1 genome

Gene IDSed0004004
OrganismSechium edule (Chayote v1)
DescriptionRibosomal protein L37
Genome locationLG05:28603386..28605618
RNA-Seq ExpressionSed0004004
SyntenySed0004004
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001569 - Ribosomal protein L37e
IPR011331 - Ribosomal protein L37ae/L37e
IPR011332 - Zinc-binding ribosomal protein
IPR018267 - Ribosomal protein L37e, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019448155.1 PREDICTED: 60S ribosomal protein L37-3 [Lupinus angustifolius]4.3e-4394.74Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+RHVPRRFKSGFREGT+AAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

XP_022150495.1 60S ribosomal protein L37-3 [Momordica charantia]3.3e-4395.79Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

XP_022955411.1 60S ribosomal protein L37-3 [Cucurbita moschata]3.0e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

XP_031252760.1 60S ribosomal protein L37-3 [Pistacia vera]8.6e-4496.84Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

XP_038717722.1 60S ribosomal protein L37-3 [Tripterygium wilfordii]3.3e-4394.74Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRY+RH+PRRFKSGFREGTQAAPR KGAAA+A
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

TrEMBL top hitse value%identityAlignment
A0A6J1D8M5 Ribosomal protein L371.6e-4395.79Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

A0A6J1GTP8 Ribosomal protein L371.4e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

A0A6J1IW96 Ribosomal protein L371.4e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

A0A6J1KAY5 Ribosomal protein L371.6e-4395.79Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTGTGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

A0A7J7CYG1 Ribosomal protein L371.6e-4394.74Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTGTGRMRY+RH+PRRFKSGFREGTQAAPR KGAAA+A
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

SwissProt top hitse value%identityAlignment
Q43292 60S ribosomal protein L37-28.4e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+GFREGT+A PR KG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

Q8LEM8 60S ribosomal protein L37-32.9e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+GFREGT+A PR K +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

Q8LFH7 60S ribosomal protein L37-11.4e-4186.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+ FREGTQA PR K AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

Q90YT1 60S ribosomal protein L374.8e-2967.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKR YNWS KA RR TTGTGRMR+M+ V RRF++GFREGT   PR    AAS+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

Q9VXX8 Probable 60S ribosomal protein L37-A2.1e-2968.97Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPR
        M KGT SFGKR NKTHTLC RCGR S+H+QKS C+ C +PAA+ R+YNWS+KA RRKTTGTGRM++++ V RRF++GFREGTQA P+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPR

Arabidopsis top hitse value%identityAlignment
AT1G15250.1 Zinc-binding ribosomal protein family protein1.0e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+ FREGTQA PR K AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

AT1G52300.1 Zinc-binding ribosomal protein family protein5.9e-4386.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+GFREGT+A PR KG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

AT3G16080.1 Zinc-binding ribosomal protein family protein2.0e-4386.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTGTGRMRY+R+VPRRFK+GFREGT+A PR K +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGGGAACGGGAAGTTTCGGTAAGAGAAGGAACAAGACCCACACTCTCTGTGTCAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGCCGATGCTCCGCCTG
CGCTTTTCCGGCTGCCCGTAAGCGAACATATAATTGGAGCCTGAAGGCAATCAGGAGGAAGACGACTGGAACGGGGCGGATGAGATACATGCGCCATGTTCCACGCAGAT
TTAAGAGTGGCTTCAGAGAAGGTACCCAAGCAGCACCAAGGATCAAAGGAGCAGCAGCATCAGCCTAA
mRNA sequenceShow/hide mRNA sequence
CGAGTATGAAAGTTTGGAGGTAGGTCAAAATTATACGGGTCGAAATTTCCTCCAAACCCTAAACCATCCCTATATAAACCCCGCCGCTTACAGATAAGTTCTCTTTGGAC
GGAAGAGGAACTCAAAGGCTTGATCGTCAAATTCGATTCGATGGGCAAGGGAACGGGAAGTTTCGGTAAGAGAAGGAACAAGACCCACACTCTCTGTGTCAGGTGTGGCC
GCCGCAGCTTCCACCTGCAGAAGAGCCGATGCTCCGCCTGCGCTTTTCCGGCTGCCCGTAAGCGAACATATAATTGGAGCCTGAAGGCAATCAGGAGGAAGACGACTGGA
ACGGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTTAAGAGTGGCTTCAGAGAAGGTACCCAAGCAGCACCAAGGATCAAAGGAGCAGCAGCATCAGCCTAAAG
CATTGAAGGTTAATTGTGCTACAACTTTGGTACTCTATAGTAGCTTCTAGGAGGATTCTATCATTTTTGGACCAGAATTTATATGAATTTTGTTTGATGATGTAATTGCC
TTCTATACTGAAGCTCATTTTTATTTCTTGCTATTTTGTTTATGTAATTTCTCATGATTGCTTTCAGACTACTTTCCCTTTTGGTTAATCAATGAGTGAGTTATTTACTT
CTAA
Protein sequenceShow/hide protein sequence
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA