; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004038 (gene) of Chayote v1 genome

Gene IDSed0004038
OrganismSechium edule (Chayote v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationLG04:37523815..37525995
RNA-Seq ExpressionSed0004038
SyntenySed0004038
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591934.1 hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sororia]4.3e-6183.77Show/hide
Query:  MATEEKSPTPPPQELQQSNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETT
        MAT EKSPTP          +R  LRKPVFVKVEQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECL+GDETGTI+ TARNDQVDQVKP TT
Subjt:  MATEEKSPTPPPQELQQSNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ EP NFIVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]1.1e-6487.33Show/hide
Query:  KSPTPPPQELQQSNDA-RPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQ+N A RP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSNDA-RPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIEL +P +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]1.9e-6486.67Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQ+N  ARP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIE+ +P +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]3.4e-6689.33Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP   E+QQSN +ARP LRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVS HLRQTRIAECLVGDETGTI+LTARNDQVD VKPETT+I+R
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIELTEPANF+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]2.2e-6588.67Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQSN  ARP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIEL EP +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein5.3e-6587.33Show/hide
Query:  KSPTPPPQELQQSNDA-RPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQ+N A RP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSNDA-RPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIEL +P +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

A0A1S3CKC4 uncharacterized protein At4g28440-like9.1e-6586.67Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQ+N  ARP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIE+ +P +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

A0A5D3DWE0 Nucleic acid-binding9.1e-6586.67Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP  QELQQ+N  ARP LRKPVFVK+EQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECLVGDETGTI+ TARNDQVDQVKP TT+ILR
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIE+ +P +F+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

A0A6J1CG19 uncharacterized protein At4g28440-like1.7e-6689.33Show/hide
Query:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR
        KSPTP   E+QQSN +ARP LRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVS HLRQTRIAECLVGDETGTI+LTARNDQVD VKPETT+I+R
Subjt:  KSPTPPPQELQQSN-DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILR

Query:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        NAKIDMFKGSMRLAVDKWGRIELTEPANF+VKEDNNLSLVEYELVNVA+E
Subjt:  NAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

A0A6J1FBC1 uncharacterized protein At4g28440-like3.6e-6182.47Show/hide
Query:  MATEEKSPTPPPQELQQSNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETT
        MAT EKSPTP          +R  LRKPVFVKVEQLKPGTNGHTL+VKVVSSNTVLQKGRSVS HLRQTRIAECL+GDETGTI+ TARNDQVDQVKP TT
Subjt:  MATEEKSPTPPPQELQQSNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ EP NF+VKEDNNLSL+EYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284404.2e-4366.67Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGR------SVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S   + +RI ECL+GDETG I+ TARNDQVD +KP  TVILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGR------SVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV  +
Subjt:  DKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein4.3e-4365.19Show/hide
Query:  DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK--GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL
        +A  ALRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+ TARNDQVD +K  + V LRNAKIDM+KGSMRL
Subjt:  DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK--GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL

Query:  AVDKWGRIELT-EPANFIVKEDNNLSLVEYELVNV
        AVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  AVDKWGRIELT-EPANFIVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein4.3e-4365.19Show/hide
Query:  DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK--GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL
        +A  ALRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+ TARNDQVD +K  + V LRNAKIDM+KGSMRL
Subjt:  DARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK--GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL

Query:  AVDKWGRIELT-EPANFIVKEDNNLSLVEYELVNV
        AVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  AVDKWGRIELT-EPANFIVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein6.4e-4764.71Show/hide
Query:  SNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL
        ++  +  L+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+ TARNDQVD +K  +TV LRNAKIDM+KGSMRL
Subjt:  SNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRL

Query:  AVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVAD
        AVDKWGR+E+TEPA+F VKED N+SL+EYELVNV +
Subjt:  AVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVAD

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein4.0e-4966.45Show/hide
Query:  KSPTPPPQELQQSNDARP-----ALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK-GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPET
        ++P PP    + S +  P       +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  I+ TARNDQV+ +KP  
Subjt:  KSPTPPPQELQQSNDARP-----ALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQK-GRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPET

Query:  TVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        TV LRNAKIDMFKGSMRLAVDKWGRIE TEPA+  VKEDNNLSLVEYELVNV +E
Subjt:  TVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein3.0e-4466.67Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGR------SVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S   + +RI ECL+GDETG I+ TARNDQVD +KP  TVILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGR------SVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV  +
Subjt:  DKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGAGGAGAAATCACCTACGCCGCCACCGCAGGAGCTGCAGCAGAGCAATGATGCGAGGCCAGCCCTGAGGAAGCCAGTCTTCGTTAAGGTGGAGCAGCTCAA
GCCTGGCACTAATGGCCACACACTCGTCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGCCGATCGGTGTCTCACCACCTTCGACAGACGCGGATCGCTGAGT
GCCTTGTTGGGGACGAAACTGGAACCATTATGTTAACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGAGACCACTGTCATTCTACGTAATGCTAAGATTGACATG
TTCAAAGGGTCTATGAGGTTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCAAATTTCATCGTCAAGGAAGACAATAATCTTTCTTTAGTCGAGTATGA
ACTCGTGAATGTTGCAGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
GGGCACAACTATGAAATAGATTAACAAGATAGCCAACTATGTCATTTACCTCACTAAAAATTAAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAATGATACATATGGTTAT
ATGGTTGAGTCTAAAAAAATAATATGGTTATATGGTTGCGTACATTAGCCACAATTGGCCAAATCAAGAGTCCTATATAAACCCCCTCTCCATCAGCCCACAAATGAGCA
CGCTCGGAAGAGAGAGATCGGTAGAGACTAGAGCAGAGAGATTTTCGACCACAGTTACGCGAATTGGAAACTAGGGTTTGGCGCGCTGTTGATCATCGGCGTCGGCATCA
ATGGCGACGGAGGAGAAATCACCTACGCCGCCACCGCAGGAGCTGCAGCAGAGCAATGATGCGAGGCCAGCCCTGAGGAAGCCAGTCTTCGTTAAGGTGGAGCAGCTCAA
GCCTGGCACTAATGGCCACACACTCGTCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGCCGATCGGTGTCTCACCACCTTCGACAGACGCGGATCGCTGAGT
GCCTTGTTGGGGACGAAACTGGAACCATTATGTTAACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGAGACCACTGTCATTCTACGTAATGCTAAGATTGACATG
TTCAAAGGGTCTATGAGGTTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCAAATTTCATCGTCAAGGAAGACAATAATCTTTCTTTAGTCGAGTATGA
ACTCGTGAATGTTGCAGATGAGTGATAGGTCGTACTAAAGGCCAACTTATGCATACAATGGGTTGAGATGGCTGGTCATCGAGTTTCCTGGTTATCTGCTGATGTGAATA
TATAACAGCACTATGTTATAACTTTGTGTGTGTGAAGTATTTATATGAACAATCCCTTGATTTCATCTGAACTTCAAAACATGAAAGCTCTGCTTCATCGGTATGACTTA
CATGAGCCGTGTTTGGTTTGGTAAAGGTATAAATATTTATTAGTTGGGTTCTTAAAACTCTGGAAATGTAATCTAGTATTAATGACGACTAAGAATGCTTTCGTTATGGC
CCTGATAACGTATATAAAATGCAGAGTTTCAATTTACTGGGCGTGTATACTGTATATTTTCTTGCAATTCATATTATGTGCATGTTCTAGATAGGAACTTATCTTGTAGG
TGGTTTAACATCAAGGCAACAGCAAAAGTCTTTGGAC
Protein sequenceShow/hide protein sequence
MATEEKSPTPPPQELQQSNDARPALRKPVFVKVEQLKPGTNGHTLVVKVVSSNTVLQKGRSVSHHLRQTRIAECLVGDETGTIMLTARNDQVDQVKPETTVILRNAKIDM
FKGSMRLAVDKWGRIELTEPANFIVKEDNNLSLVEYELVNVADE