; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004061 (gene) of Chayote v1 genome

Gene IDSed0004061
OrganismSechium edule (Chayote v1)
Descriptioncoiled-coil domain-containing protein 1 isoform X3
Genome locationLG03:5920093..5921322
RNA-Seq ExpressionSed0004061
SyntenySed0004061
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]3.1e-6176.02Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAA-VPRKI----QSDSSSKPPPAIENLVVDGE
        MDFRK     +GN+DEQVEQLLQAAQDDLMLKLSV+SHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA+  PR      QSDSSS+PPP IENLVVDGE
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAA-VPRKI----QSDSSSKPPPAIENLVVDGE

Query:  SQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE-------EVDDEDDESSSSDEDFDDRRKKK
        SQS+LGDDLA RFAALKA+LP S TPPPSS+PND DSD DE+DEVEKLIQWAKDAARLDPSPPS+E       + DD+D+E  SSDED DDR+K++
Subjt:  SQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE-------EVDDEDDESSSSDEDFDDRRKKK

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-6177.2Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAA-VPRKI----QSDSSSKPPPAIENLVVDGE
        MDFRK     +GN+DEQVEQLLQAAQDDLMLKLSV+SHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA+  PR      QSDSSS+PPP IENLVVDGE
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAA-VPRKI----QSDSSSKPPPAIENLVVDGE

Query:  SQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK
        SQS+LGDDLA RFAALKA+LP S TPPPSS+PND DSD DE+DEVEKLIQWAKDAARLDPSPPS+E    + DD+D+E +SSDED DDR+K++
Subjt:  SQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK

XP_022141565.1 uncharacterized protein LOC111011897 [Momordica charantia]1.7e-6481.08Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA-AVPRKIQSDSSSKPPPAIENLVVDGESQSL
        MDFRKK G  +GNDDEQVEQLLQAAQDDLMLKL+++SHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA   PR  +SD  SK PPAIENL VDGESQS+
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA-AVPRKIQSDSSSKPPPAIENLVVDGESQSL

Query:  LGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK
        LGDDLA RFAALKA+LP S  PPPSS+PND DS+ DE+DEVEKLIQWAKDAARLDPSPPSD++ DD DDESSSSDED DDRRK++
Subjt:  LGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK

XP_022939254.1 nucleolin [Cucurbita moschata]1.1e-6378.84Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES
        MDFRK    ++GN+DEQVEQLLQAAQDDLMLKLSV+SHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+  PR      QSDSSS+PPP IENLVVDGES
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES

Query:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDES-SSSDEDFDDRRKKK
        QS+LGDDLA RFAALKA+LP S TPPPSS+PND DSD DE+DEVEKLIQWAKDAARLDPSPPS+E+ +D+DDE  +SSDED DDR+K++
Subjt:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDES-SSSDEDFDDRRKKK

XP_023550367.1 nucleolin [Cucurbita pepo subsp. pepo]1.8e-6176.56Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES
        MDFRK     +GN+DEQVEQLLQAAQDDLMLK SV+SHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+  PR      QSDSSS+PPP IENLVVDGES
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES

Query:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK
        QS+LGDDLA RFAALKA+LP S TPPPSS+ ND DSD DE+DEVEKLIQWAKDAARLDPSPPS+E    + DD+D+E +SSDED DDR+K++
Subjt:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK

TrEMBL top hitse value%identityAlignment
A0A1S4E6L5 uncharacterized protein LOC1035028664.8e-6073.98Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRK-------IQSDSSSKPPPAIENLVVD
        MD RKK G  N ++ EQ+EQLLQAAQDDL+LKL+++SHMSRVSPNYL SDLDRRFQALRSRPSS   AAAVPR        IQSDSSS+PPP IENLVVD
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRK-------IQSDSSSKPPPAIENLVVD

Query:  GESQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDD----RRKKKA
        GESQS+LGDDLA RFAALKA+LP S TPP SS+PND DS  DE+DEVEKLIQWAKDAARLDPSPPS+E  DDE++E  SSDED +D    RRKKKA
Subjt:  GESQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDD----RRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X31.6e-6074.49Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRK-------IQSDSSSKPPPAIENLVVD
        MD RKK G  N ++ EQ+EQLLQAAQDDLMLKL+++SHMSRVSPNYL SDLDRRFQALRSRPSS   AAAVPR        IQSDSSS+PPP IENLVVD
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRK-------IQSDSSSKPPPAIENLVVD

Query:  GESQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDD----RRKKKA
        GESQS+LGDDLA RFAALKA+LP S TPP SS+PND DS  DE+DEVEKLIQWAKDAARLDPSPPS+E  DDE++E  SSDED +D    RRKKKA
Subjt:  GESQSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDD----RRKKKA

A0A6J1CIG2 uncharacterized protein LOC1110118978.4e-6581.08Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA-AVPRKIQSDSSSKPPPAIENLVVDGESQSL
        MDFRKK G  +GNDDEQVEQLLQAAQDDLMLKL+++SHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA   PR  +SD  SK PPAIENL VDGESQS+
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAA-AVPRKIQSDSSSKPPPAIENLVVDGESQSL

Query:  LGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK
        LGDDLA RFAALKA+LP S  PPPSS+PND DS+ DE+DEVEKLIQWAKDAARLDPSPPSD++ DD DDESSSSDED DDRRK++
Subjt:  LGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK

A0A6J1FGM0 nucleolin5.4e-6478.84Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES
        MDFRK    ++GN+DEQVEQLLQAAQDDLMLKLSV+SHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+  PR      QSDSSS+PPP IENLVVDGES
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES

Query:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDES-SSSDEDFDDRRKKK
        QS+LGDDLA RFAALKA+LP S TPPPSS+PND DSD DE+DEVEKLIQWAKDAARLDPSPPS+E+ +D+DDE  +SSDED DDR+K++
Subjt:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDES-SSSDEDFDDRRKKK

A0A6J1JTW4 glucosidase 2 subunit beta9.6e-6176.56Show/hide
Query:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES
        MDFRK     +GN+DEQVEQLLQAAQDDLMLKLSV+SHMSRVSPNYLDSDLDRRFQALRSRPSSAAA    PR      QSDSSS+PPP IENLVVDGES
Subjt:  MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKI----QSDSSSKPPPAIENLVVDGES

Query:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK
        QS+LGDDLA RFAALKA+LP S TPPPSS+PND DSD DE+DEVEKLIQWAKDA RLDPSPPS+E    + DD+D+E +SSDED DDR+K++
Subjt:  QSLLGDDLAVRFAALKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDE----EVDDEDDESSSSDEDFDDRRKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24370.1 unknown protein2.3e-2243.18Show/hide
Query:  GNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKIQSDSSSKPPPAIENLVVDGESQSLLGDDLAVRFAAL
        G ++++VEQLLQAAQD+++LKLSV+SH SR S +YLD DL  RF AL+S+           +K       K  P ++    D   ++   +DL +RFAAL
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKIQSDSSSKPPPAIENLVVDGESQSLLGDDLAVRFAAL

Query:  KATLPPSNTPPPSSVPNDGDSDGD---EDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK
        K +LP +++     + ++   DGD   ED EV+KLIQWA DAARLDPSP S    DDE  ++  SD++ D  R  K
Subjt:  KATLPPSNTPPPSSVPNDGDSDGD---EDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCAGGAAGAAGATCGGAAACGACAACGGCAACGACGACGAACAAGTTGAGCAATTACTGCAAGCTGCTCAGGACGATCTCATGCTGAAATTGAGCGTCAATTC
TCACATGTCGCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCTTCCGCCGCCGCCGCCGCCGCTGTCCCTCGCA
AGATTCAGTCCGATTCGTCGTCCAAGCCACCACCAGCGATCGAAAACCTAGTCGTCGATGGCGAATCTCAGTCGCTTCTCGGCGACGATCTCGCCGTGCGATTCGCTGCT
CTGAAGGCGACTTTGCCTCCCTCGAATACTCCGCCTCCGTCATCTGTACCTAACGATGGCGATAGCGACGGCGATGAAGACGATGAGGTTGAGAAGCTGATTCAGTGGGC
CAAGGACGCCGCTCGTCTCGATCCTTCGCCTCCTTCGGACGAAGAGGTCGACGACGAAGACGACGAATCGAGCAGTTCCGATGAAGATTTCGACGATCGGAGAAAAAAGA
AGGCCGTGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAACAAAAAATCAAACGGTTGAAAACCAAACCTCACCAAAATTGGTTTGCTTTCTTATTTATTTAATTTCCAGCTGAATGGTTGAACTAAAAAAAAACCCTAAAAACA
ATAACAATAAAGTTGAAGAGGGTAAAATTTTTGAAATGAAATTGGGAATTTGTCGAGGGTATAATGGTAATTTTAAAGAAAATGAAATCCCAGAAAAGAAAAGACCGAGC
AGCAATATCAATGGCTGAAATTGCCAAAATCGCGAAAGAATTACGAAGAGAGAAAAAAAAAAAAACAAGAACAGCAAATTAGAGCAGAAAAAAAATGGATTTCAGGAAGA
AGATCGGAAACGACAACGGCAACGACGACGAACAAGTTGAGCAATTACTGCAAGCTGCTCAGGACGATCTCATGCTGAAATTGAGCGTCAATTCTCACATGTCGCGTGTA
TCCCCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCTTCCGCCGCCGCCGCCGCCGCTGTCCCTCGCAAGATTCAGTCCGATTC
GTCGTCCAAGCCACCACCAGCGATCGAAAACCTAGTCGTCGATGGCGAATCTCAGTCGCTTCTCGGCGACGATCTCGCCGTGCGATTCGCTGCTCTGAAGGCGACTTTGC
CTCCCTCGAATACTCCGCCTCCGTCATCTGTACCTAACGATGGCGATAGCGACGGCGATGAAGACGATGAGGTTGAGAAGCTGATTCAGTGGGCCAAGGACGCCGCTCGT
CTCGATCCTTCGCCTCCTTCGGACGAAGAGGTCGACGACGAAGACGACGAATCGAGCAGTTCCGATGAAGATTTCGACGATCGGAGAAAAAAGAAGGCCGTGTGAGCGTT
GAGCTTTGATTTGCTGATTATCGGGGGATTTGGAAACTCAAGATTCAAAGATTAGATGATTCCTTGCCTGGATCTTCGTTGCGAGAAGGTAGGGCTTACCGGTGCGGCGT
CGCCGACACAGTTCAAAACGCCTTCCATAGAGTACTGTACTCTCTCTTTTTCTTTTCTTTTTTTTCTTTTTTTTTTCCGTTTTCGTTTCTCAATCTGATTCTTCATTGTT
CTAATTTCACTTTCATCTCTGAACAGTCTTTTGCTTTTCTTCAATTTGTTCCAACCTTGTGGAACAATAACACGATGCTTGATTCATAAACTCATGTTTGGAAGGGCGAC
TATAAGTATTGAGTATGAAA
Protein sequenceShow/hide protein sequence
MDFRKKIGNDNGNDDEQVEQLLQAAQDDLMLKLSVNSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAAVPRKIQSDSSSKPPPAIENLVVDGESQSLLGDDLAVRFAA
LKATLPPSNTPPPSSVPNDGDSDGDEDDEVEKLIQWAKDAARLDPSPPSDEEVDDEDDESSSSDEDFDDRRKKKAV