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Sed0004083 (gene) of Chayote v1 genome

Gene IDSed0004083
OrganismSechium edule (Chayote v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationLG12:33831627..33832374
RNA-Seq ExpressionSed0004083
SyntenySed0004083
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150016.3 zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]8.1e-8395.68Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

XP_008465020.2 PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]1.2e-8195.62Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG

XP_008465021.2 PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]8.1e-8395.68Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

XP_011656267.2 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]1.2e-8195.62Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG

XP_038880145.1 zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Benincasa hispida]5.3e-8294.96Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+T SCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

TrEMBL top hitse value%identityAlignment
A0A0A0LWE1 Uncharacterized protein3.9e-8395.68Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

A0A1S3CMY6 uncharacterized protein LOC103502740 isoform X23.9e-8395.68Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

A0A1S3CNB1 uncharacterized protein LOC103502740 isoform X15.7e-8295.62Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG

A0A1S3CPF6 uncharacterized protein LOC103502740 isoform X35.7e-8295.62Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFG

A0A5D3E0T0 Zinc finger Ran-binding domain-containing protein 2-like isoform X33.9e-8395.68Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI
        MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYM+GSDQ GSDASI
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASI

Query:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA
        PPGWKSGDWICPR+GCG+HNYASRMECFKCKTPRDFGGA
Subjt:  PPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGGA

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c6.8e-0826.15Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYN-KTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASIPPGW
        GDW C +C   NF++R +C RC +P       +T S     +   G+ Y +  S    NY    +       +S      G   +              +
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYN-KTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASIPPGW

Query:  KSGDWICPRIGCGIHNYASRMECFKCKTPR
        ++GDW C   GCG HN+A  + C +C   R
Subjt:  KSGDWICPRIGCGIHNYASRMECFKCKTPR

O95218 Zinc finger Ran-binding domain-containing protein 21.4e-0533.33Show/hide
Query:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+        G   IG         +   + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR

Q19QU3 Zinc finger Ran-binding domain-containing protein 21.4e-0533.33Show/hide
Query:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+        G   IG         +   + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 22.9e-0634.48Show/hide
Query:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+        G   IG         +   + + DW C    CG  N+A R EC  C TP+
Subjt:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR

Q9R020 Zinc finger Ran-binding domain-containing protein 21.4e-0533.33Show/hide
Query:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+        G   IG         +   + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPG--DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPR

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein7.2e-0527.71Show/hide
Query:  GDWICNVCQNVNFKKREACHRCG-YPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRC---GAFKSVYPGDY
        GDW C  C+ +NF K   C RC  + +           +   +  GDW C T  C   N++    C RC      + + PG++
Subjt:  GDWICNVCQNVNFKKREACHRCG-YPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRC---GAFKSVYPGDY

AT2G17975.1 zinc finger (Ran-binding) family protein2.0e-1834.9Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSV-------YPG----------------
        GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW C+   C  +NYASR  C +CG  K V        PG                
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSV-------YPG----------------

Query:  -DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKC
         D    ++      + AS+   W+SGDWIC    CG HNY+SR++C KC
Subjt:  -DYGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-5864.03Show/hide
Query:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGD-YGAYMIGSDQCGSDAS
        MSW+ GDW+C  CQ+ NFKKRE+C +CGYPK+GG D STY YN+TEV+AGDWYC  ++CG+HNYASR +C+RCG  K  Y    YGA M+     G  A+
Subjt:  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGD-YGAYMIGSDQCGSDAS

Query:  IPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGG
         PPGWK+GDW+CPR+GCG+HNYASR ECFKCKT RD+GG
Subjt:  IPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRDFGG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein5.7e-3443.87Show/hide
Query:  GDWICNVCQNVNFKKREACHRCG-------------YPKYGGPDPSTYSYNK-TEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGS
        GDW C  C ++NF++R++C RCG             +  +GG   S + +   ++V  GDWYC+  +CG HN+ASR  CF+CG FK       G   IG 
Subjt:  GDWICNVCQNVNFKKREACHRCG-------------YPKYGGPDPSTYSYNK-TEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGS

Query:  DQCGSDASI----PPG------WKSGDWICPRIGCGIHNYASRMECFKCKTPRDF
             DA I     PG      WKSGDWIC RIGC  HN+ASRMECF+C  PRDF
Subjt:  DQCGSDASI----PPG------WKSGDWICPRIGCGIHNYASRMECFKCKTPRDF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein5.3e-3237.74Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGG------------PDPSTYSYNK-TEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGD---------
        GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +V  GDWYC+   CG HN+A+R +CF+CGA K  +            
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGG------------PDPSTYSYNK-TEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGD---------

Query:  -------YGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRD
                G +  G    G   +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Subjt:  -------YGAYMIGSDQCGSDASIPPGWKSGDWICPRIGCGIHNYASRMECFKCKTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAGAATGTAAATTTCAAGAAAAGAGAAGCATGCCATCGTTGTGGTTACCCCAAGTATGGAGGCCCAGACCC
TTCAACTTACAGTTATAACAAGACGGAGGTGTTGGCCGGCGACTGGTACTGCTCCACCGTCAGTTGCGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTG
GTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATAGGTTCCGATCAGTGTGGATCTGATGCAAGCATCCCGCCTGGCTGGAAATCGGGAGACTGGATT
TGCCCTAGAATTGGATGCGGAATACATAATTATGCCAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGGTCAGCAGGAGACTGGATATGCAACGTTTGCCAGAATGTAAATTTCAAGAAAAGAGAAGCATGCCATCGTTGTGGTTACCCCAAGTATGGAGGCCCAGACCC
TTCAACTTACAGTTATAACAAGACGGAGGTGTTGGCCGGCGACTGGTACTGCTCCACCGTCAGTTGCGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTG
GTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATAGGTTCCGATCAGTGTGGATCTGATGCAAGCATCCCGCCTGGCTGGAAATCGGGAGACTGGATT
TGCCCTAGAATTGGATGCGGAATACATAATTATGCCAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTGGTGCAGCTTAA
Protein sequenceShow/hide protein sequence
MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMIGSDQCGSDASIPPGWKSGDWI
CPRIGCGIHNYASRMECFKCKTPRDFGGAA