; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004121 (gene) of Chayote v1 genome

Gene IDSed0004121
OrganismSechium edule (Chayote v1)
DescriptionHTH myb-type domain-containing protein
Genome locationLG05:41710969..41713322
RNA-Seq ExpressionSed0004121
SyntenySed0004121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150753.1 two-component response regulator ARR10 [Cucumis sativus]1.9e-1249.53Show/hide
Query:  TPKIRSFNHDLLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEM-----MVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQL
        T K+   +H LLHPPT+ PSP FKL+ C  +P DRLIQRPST L+L L  +  +ENG         +NN+EKLE  E R+ EI+T+LSLSL SS+S QQ 
Subjt:  TPKIRSFNHDLLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEM-----MVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQL

Query:  QEEYRDK
        + +  ++
Subjt:  QEEYRDK

XP_008448244.1 PREDICTED: uncharacterized protein LOC103490495 isoform X1 [Cucumis melo]2.5e-1253.47Show/hide
Query:  NHD-LLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMM-----VNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEEYRD
        NHD LLHPPT+ PSP FKL+ C  +P D LIQRPST L+L L  +  +ENG   M     ++N+EKLE  ECR+ EI+T+LSLSL SS+S  +LQ+E+++
Subjt:  NHD-LLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMM-----VNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEEYRD

Query:  K
        +
Subjt:  K

XP_022149738.1 uncharacterized protein LOC111018097 [Momordica charantia]1.9e-0745.83Show/hide
Query:  TPKIRSF-NHDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEI----------DTLLSLSLC-
        TPK+RSF NHD LH  PP S   LF+ S C       L+QRPST+LQL L   KS ENG   MVNN+E  E   CR   I          DTLLSLSL  
Subjt:  TPKIRSF-NHDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEI----------DTLLSLSLC-

Query:  ---SSASTQQLQEEYRDKTN
           SS  +   ++   D+TN
Subjt:  ---SSASTQQLQEEYRDKTN

XP_023533211.1 uncharacterized protein LOC111795167 [Cucurbita pepo subsp. pepo]5.1e-0543.16Show/hide
Query:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE
        K+ SF+HDLLHPPT PS    + P           RPSTD  L+LSL  S E+G  M +N+++K      +++EI+T+LSLSL SS+  Q   E+
Subjt:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE

XP_038902174.1 two-component response regulator ARR18-like [Benincasa hispida]1.1e-1254.05Show/hide
Query:  PKIRSFN-HDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMV--NNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQ-
        PK+ SFN HD LH  P TS SPLFKLS    EP D L+QRPST L+L L  +  +ENG  +MV  NN+ + E  ECR+ EIDT+LSLSL +S+S QQ Q 
Subjt:  PKIRSFN-HDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMV--NNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQ-

Query:  --EEYRDKTNC
          EE R    C
Subjt:  --EEYRDKTNC

TrEMBL top hitse value%identityAlignment
A0A0A0KBB2 HTH myb-type domain-containing protein9.4e-1349.53Show/hide
Query:  TPKIRSFNHDLLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEM-----MVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQL
        T K+   +H LLHPPT+ PSP FKL+ C  +P DRLIQRPST L+L L  +  +ENG         +NN+EKLE  E R+ EI+T+LSLSL SS+S QQ 
Subjt:  TPKIRSFNHDLLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEM-----MVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQL

Query:  QEEYRDK
        + +  ++
Subjt:  QEEYRDK

A0A1S3BK41 uncharacterized protein LOC103490495 isoform X11.2e-1253.47Show/hide
Query:  NHD-LLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMM-----VNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEEYRD
        NHD LLHPPT+ PSP FKL+ C  +P D LIQRPST L+L L  +  +ENG   M     ++N+EKLE  ECR+ EI+T+LSLSL SS+S  +LQ+E+++
Subjt:  NHD-LLHPPTS-PSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMM-----VNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEEYRD

Query:  K
        +
Subjt:  K

A0A6J1D7K4 uncharacterized protein LOC1110180979.1e-0845.83Show/hide
Query:  TPKIRSF-NHDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEI----------DTLLSLSLC-
        TPK+RSF NHD LH  PP S   LF+ S C       L+QRPST+LQL L   KS ENG   MVNN+E  E   CR   I          DTLLSLSL  
Subjt:  TPKIRSF-NHDLLH--PPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEI----------DTLLSLSLC-

Query:  ---SSASTQQLQEEYRDKTN
           SS  +   ++   D+TN
Subjt:  ---SSASTQQLQEEYRDKTN

A0A6J1G6A3 uncharacterized protein LOC1114511553.2e-0543.16Show/hide
Query:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE
        K+ SF+HDLLHPPT PS    + P           RPSTD  L+LSL  S E+G  M +N ++K      +++EI+T+LSLSL SS+  Q   E+
Subjt:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE

A0A6J1I531 two-component response regulator ARR10-like3.2e-0543.16Show/hide
Query:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE
        K+ SF+HDLLHPPT PS    + P            PSTD  L+LSL  S E+G  M +N ++K      +++EI+T+LSLSL SS+  QQ  E+
Subjt:  KIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTLLSLSLCSSASTQQLQEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGTTCAGAGGGCACAATAGTAATTTCCTCTCACACTTCACAAAGCCTTGCCACTACCTCAGGCCACCTGCTAACCCTTCAAGGGACCCCCAAAATTAGAAGCTT
CAATCATGATCTTCTTCACCCTCCAACTTCACCTTCTCCACTGTTCAAGCTTAGCCCCTGCTGCTTGGAGCCACTCGATCGCCTCATCCAACGTCCATCGACCGATTTGC
AGTTACAGCTGAGTTTAAGCAAGAGCTTGGAAAATGGGGATGAAATGATGGTGAATAATGATGAGAAATTAGAAGTGATTGAATGCAGAAAACAAGAGATTGATACACTA
CTTTCTCTGTCACTATGTAGCTCTGCATCAACACAACAACTACAAGAAGAATATAGAGACAAAACAAATTGTTACAGAGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGTTCAGAGGGCACAATAGTAATTTCCTCTCACACTTCACAAAGCCTTGCCACTACCTCAGGCCACCTGCTAACCCTTCAAGGGACCCCCAAAATTAGAAGCTT
CAATCATGATCTTCTTCACCCTCCAACTTCACCTTCTCCACTGTTCAAGCTTAGCCCCTGCTGCTTGGAGCCACTCGATCGCCTCATCCAACGTCCATCGACCGATTTGC
AGTTACAGCTGAGTTTAAGCAAGAGCTTGGAAAATGGGGATGAAATGATGGTGAATAATGATGAGAAATTAGAAGTGATTGAATGCAGAAAACAAGAGATTGATACACTA
CTTTCTCTGTCACTATGTAGCTCTGCATCAACACAACAACTACAAGAAGAATATAGAGACAAAACAAATTGTTACAGAGGTTGTTGA
Protein sequenceShow/hide protein sequence
MDSSEGTIVISSHTSQSLATTSGHLLTLQGTPKIRSFNHDLLHPPTSPSPLFKLSPCCLEPLDRLIQRPSTDLQLQLSLSKSLENGDEMMVNNDEKLEVIECRKQEIDTL
LSLSLCSSASTQQLQEEYRDKTNCYRGC