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Sed0004136 (gene) of Chayote v1 genome

Gene IDSed0004136
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L35
Genome locationLG12:32948683..32951326
RNA-Seq ExpressionSed0004136
SyntenySed0004136
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023426.1 50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.8e-5781.46Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS+  SFG RFSP CSR SVRV+ SSVR    NKA  LRL  + NIS FG+ALLQKP HIAPSS++  P TV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

XP_022135558.1 50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]1.8e-5983.55Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRF-GPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS+ +SFG RFSP CSRPSVRV+H SVR     NK N LRLG + NISGFG+ALLQK  HIAP+SQV  PLTV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRF-GPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

XP_022988597.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima]4.8e-5780.13Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS+++SFG RFSP CSR SVRV+  SVR    NKA  LRL  + N+S FG+ALLQKP HIAPSS++  P TV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

XP_023516182.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]6.8e-5982.12Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS+  SFG RFSP CSR SVRV+ SSVR    NKA  LRL  + NIS FG+AL+QKPCHIAPSS++R P TV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

XP_023531155.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]3.7e-5779.47Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MAS S+A+ FG RF+P CSRPS  V+HSS+R    NKAN LRL  + NISG G+ALLQK C IAP  QV  PLTV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR A+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

TrEMBL top hitse value%identityAlignment
A0A0A0LYX0 50S ribosomal protein L353.1e-5778.81Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS A+SFG RFSP CSRPS RV+H+SV    VNK N L+L  + NISGFG   LQKP HI+P+SQ+R P TVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLL KKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNR A+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

A0A1S3B9R8 50S ribosomal protein L353.1e-5777.48Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS A+SFG RFSP CSRPS RV+H+SV     NK N L+L  + NISGFG+  LQKP HI+P+SQ+  P TVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNR A+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

A0A6J1C550 50S ribosomal protein L358.6e-6083.55Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRF-GPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS+ +SFG RFSP CSRPSVRV+H SVR     NK N LRLG + NISGFG+ALLQK  HIAP+SQV  PLTV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRF-GPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

A0A6J1EZN8 50S ribosomal protein L352.0e-5679.47Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS+A  FG RF+P CSRPS  V+ SS+R    NKAN LRL  + NISG G+ALLQK C IAP  QV  PLTV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR A+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

A0A6J1JDG6 50S ribosomal protein L352.3e-5780.13Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS+++SFG RFSP CSR SVRV+  SVR    NKA  LRL  + N+S FG+ALLQKP HIAPSS++  P TV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR AK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK

SwissProt top hitse value%identityAlignment
B2J0D1 50S ribosomal protein L355.1e-0957.14Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

P23326 50S ribosomal protein L35, chloroplastic7.3e-3259.62Show/hide
Query:  MASASSALSF---GFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGF---GIALLQKPCHIAPSS-QVRAP-LTVFAAKGYKMKTHKASAKR
        MASA++ LSF       SPP +R S     S   F    K+  L L  + +IS      I L  K      SS    +P  TVFAAKGYKMKTHKASAKR
Subjt:  MASASSALSF---GFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGF---GIALLQKPCHIAPSS-QVRAP-LTVFAAKGYKMKTHKASAKR

Query:  FRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR
        FRVTG+GKIVRRRAGKQHLL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR
Subjt:  FRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNR

Q3M7I2 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Q8VZ55 50S ribosomal protein L35, chloroplastic1.9e-3261.18Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVA-HSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIA-PSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGR
        MAS S A S    F  P    S +V+  SSV F          L  + +ISG    L  K   +A P+SQ     TVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASSALSFGFRFSPPCSRPSVRVA-HSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIA-PSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLA
        GKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR A
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLA

Q8YRL9 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L351.4e-3361.18Show/hide
Query:  MASASSALSFGFRFSPPCSRPSVRVA-HSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIA-PSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGR
        MAS S A S    F  P    S +V+  SSV F          L  + +ISG    L  K   +A P+SQ     TVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASSALSFGFRFSPPCSRPSVRVA-HSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIA-PSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLA
        GKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR A
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTGCGTCGTCGGCGCTGTCCTTTGGCTTTAGGTTTTCCCCACCGTGCTCTCGCCCATCGGTTCGCGTCGCCCATAGTTCCGTCCGGTTCGGTCCGGTCAACAA
GGCGAACCCGTTGAGGCTCGGTTTCGCCCGCAACATCTCCGGGTTTGGAATCGCCCTCCTTCAGAAGCCATGTCACATTGCTCCAAGTTCTCAAGTTCGTGCTCCCCTCA
CTGTTTTTGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCTGCAAAACGATTCAGGGTGACGGGTCGGGGGAAGATTGTTCGTAGGAGAGCAGGAAAGCAGCAT
TTGCTGTACAAGAAGAACACAAAGAGAAAATTACGGCTTTCCAAAATGCATCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTACCATACCTGAAGGTGAA
TAGGCTGGCGAAGTAG
mRNA sequenceShow/hide mRNA sequence
AAGAAAATAGCATCACTTTATCCGGACAGCAGGCCGAGTCGACGCTTCGAAGCTTCAGCTATGGCATCTGCGTCGTCGGCGCTGTCCTTTGGCTTTAGGTTTTCCCCACC
GTGCTCTCGCCCATCGGTTCGCGTCGCCCATAGTTCCGTCCGGTTCGGTCCGGTCAACAAGGCGAACCCGTTGAGGCTCGGTTTCGCCCGCAACATCTCCGGGTTTGGAA
TCGCCCTCCTTCAGAAGCCATGTCACATTGCTCCAAGTTCTCAAGTTCGTGCTCCCCTCACTGTTTTTGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCTGCA
AAACGATTCAGGGTGACGGGTCGGGGGAAGATTGTTCGTAGGAGAGCAGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGAAAATTACGGCTTTCCAAAATGCA
TCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTACCATACCTGAAGGTGAATAGGCTGGCGAAGTAGAGGCCATGACCCCACCTCACTAGATCATTGGCTG
TACTTAGTTCATTTGTATTCAAATGATTTTCAGTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGTTTAACAATATCATTTGTCTAATTGATTCCATTAGTTGATAAT
GGTACCTTTTCATTTTCTCCTCTTTTTTGATTATGGGGATATGGAGG
Protein sequenceShow/hide protein sequence
MASASSALSFGFRFSPPCSRPSVRVAHSSVRFGPVNKANPLRLGFARNISGFGIALLQKPCHIAPSSQVRAPLTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQH
LLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRLAK