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Sed0004181 (gene) of Chayote v1 genome

Gene IDSed0004181
OrganismSechium edule (Chayote v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationLG01:10371385..10372044
RNA-Seq ExpressionSed0004181
SyntenySed0004181
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583719.1 hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia]4.6e-4055.78Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT
        M++  + I +DS ESL+LD T    SS S+ VE LK+MVKF+ S+CV S  LA+    FS FPHSF            NHGMERK+MFLICNGILFLLAT
Subjt:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT

Query:  CSVIED---------SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEI-----
         SV++D         SSSF  C  SFSHS H    H QFE  LVA   +     E+EE+E EE       DE EDE+E+++EDE E+EGCF +E+     
Subjt:  CSVIED---------SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEI-----

Query:  --EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV
          EE+EEEG  R+LE+VVSTEELNKKIEEFIRKMKEEMRIEAAQT QLIAV
Subjt:  --EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV

KAG7019366.1 hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4056Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT
        M++  +AI +DS ESL+LD T    SS S+ VE LK+MVKF+ S+CV S  LA+    FS FPHSF            NHGMERK+MFLICNGILFLLAT
Subjt:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT

Query:  CSVIED---------SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEI-----
         SV++D         SSSF  C  SFSHS H    H QFE  LVA   +     E+EE+E E+       DE EDE+E+++EDE E+EGCF +E+     
Subjt:  CSVIED---------SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEI-----

Query:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV
         EE+EEEG  R+LE+VVSTEELNKKIEEFIRKMKEEMRIEAAQT QLIAV
Subjt:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV

XP_022142572.1 nardilysin-like [Momordica charantia]9.6e-3048.32Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTI-SSWSSNSSKVESLKKMVKFVFSVC----VLSFFLAIFSQFPHSFN--------FNHGMERKYMFLICNGILFLLATC
        M+++P+A  LDS+ESLNLDG   ++W   SSKV+ LK MVKFV SVC    V++ FL++FS FPHSF          NH ++R YMFL+CNGIL LLAT 
Subjt:  MDQNPKAIKLDSNESLNLDGTI-SSWSSNSSKVESLKKMVKFVFSVC----VLSFFLAIFSQFPHSFN--------FNHGMERKYMFLICNGILFLLATC

Query:  SVIEDSSSFEPCDYSFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGR---ELE
        S ++ S+S                 HH +E      EE+ +E+E ++ +   I +             E+ED+   EGCF DE+EE+EEE +G+   ELE
Subjt:  SVIEDSSSFEPCDYSFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGR---ELE

Query:  MVVSTEELNKKIEEFIRKMKEEMRIE---AAQTQLIAV
        +VVSTEELNKKIEEFIRKMKEEMRI+   AAQTQL+AV
Subjt:  MVVSTEELNKKIEEFIRKMKEEMRIE---AAQTQLIAV

XP_022927104.1 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata]7.1e-4155.6Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT
        M+   +AI +DS ESL+LD T    SS ++ VE LK+MVKF+ S+CV S  LA+    FS FPHSF            NHGMERK+MFLICNGILFLLAT
Subjt:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT

Query:  CSVIED---SSSFEPCDYSFSHSDHDHDDHH-QFE-PLVA-------AIEEQNQEMETEEKEVEEIINGVQLDEDEDENED---EDEDEDENEGCFADEI
         SV++D   SSS      SF +S   H  HH QFE  LVA       + E + QE E  E E E+       DE EDE+ED   E E+++E+EGCF +E+
Subjt:  CSVIED---SSSFEPCDYSFSHSDHDHDDHH-QFE-PLVA-------AIEEQNQEMETEEKEVEEIINGVQLDEDEDENED---EDEDEDENEGCFADEI

Query:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV
         EE+EEEGK R+LE+VVSTEELNKKIEEFIRKMKEEMRIEAAQT QLIAV
Subjt:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV

XP_038877796.1 glutamic acid-rich protein-like [Benincasa hispida]1.7e-4256.61Show/hide
Query:  MDQNPKAIKLDSNESLNL---DGTISSWSSN---SSKVESLKKMVKFVFSVCVLSFFLAIFSQFPHSFN----------FNHGMERKYMFLICNGILFLL
        M++ P+A  LDSN+SLNL   D  I + S +    SKVE L +MVKF     VL+ F + FS FPHSF+           NH MERKYMFLICNGILFLL
Subjt:  MDQNPKAIKLDSNESLNL---DGTISSWSSN---SSKVESLKKMVKFVFSVCVLSFFLAIFSQFPHSFN----------FNHGMERKYMFLICNGILFLL

Query:  ATCSVIED----SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEED--EEE
        AT SVIED    SSSF  C ++ SHSDH H  HHQ E  LVAAI+  + E   ++ + EE     + +E+E   ++ +E+ +E+EGCF DE+E+D  EEE
Subjt:  ATCSVIED----SSSFEPCDYSFSHSDHDHDDHHQFE-PLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEED--EEE

Query:  GKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV
        GK RELE+VVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV
Subjt:  GKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV

TrEMBL top hitse value%identityAlignment
A0A061GIF6 Uncharacterized protein3.7e-1141.96Show/hide
Query:  LKKMVKFVFSVCVLSFFL---AIFSQFPHSFN----------FNHGMERKYMFLICNGILFLLATCSVIEDSSSFEP---CDYSFSHSD---------HD
        LK+ ++ V SV +LSFFL   + F  FPHSF+          F H +ERKYMFLICNGIL  LA  SV   SS  E       S S ++           
Subjt:  LKKMVKFVFSVCVLSFFL---AIFSQFPHSFN----------FNHGMERKYMFLICNGILFLLATCSVIEDSSSFEP---CDYSFSHSD---------HD

Query:  HDDHHQFEPLVAAIEE-----QNQEMETEEKEVEEIINGVQLDEDEDENED------EDEDEDENEGCFADEIEEDEEEGKGREL---EMVVSTEELNKK
         DD     PLVA  EE     +N+  E  E++  E +  V+  ED++E E       ED +  E E     + ++ +EEG G  L   E V STE+LN+K
Subjt:  HDDHHQFEPLVAAIEE-----QNQEMETEEKEVEEIINGVQLDEDEDENED------EDEDEDENEGCFADEIEEDEEEGKGREL---EMVVSTEELNKK

Query:  IEEFIRKMKEEMRIEAAQTQLIAV
         EEFIRKMKEE+RIE AQ QLIAV
Subjt:  IEEFIRKMKEEMRIEAAQTQLIAV

A0A0A0LVQ2 Uncharacterized protein5.7e-1240.55Show/hide
Query:  SNESLNLDG------TISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAIFSQFPHSFN----------FNHGMERKYMFLICN-GILFLLATCSVIEDSS
        S  SLNL+       + SS  + SSKVE LK+MVK      +L  F ++FS FPHSF+            H +ERKYMFLICN GILFLLAT SV   SS
Subjt:  SNESLNLDG------TISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAIFSQFPHSFN----------FNHGMERKYMFLICN-GILFLLATCSVIEDSS

Query:  SFEPCDY-SFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGRELEMVVSTEELN
        S    +Y  F HS H+H  H+ FE  V A    ++E +++  + EE     + +E     E  +E+ +E+EGCF DE+EE+EEE K          E   
Subjt:  SFEPCDY-SFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGRELEMVVSTEELN

Query:  KKIEEFIRKMKEEMRIE
        ++ +E IR   E  RIE
Subjt:  KKIEEFIRKMKEEMRIE

A0A1R3H2X2 Uncharacterized protein3.7e-1137.22Show/hide
Query:  LKKMVKFVFSVCVLSFFLA----IFSQFPHSFN----------FNHGMERKYMFLICNGILFLLATCSV--------------------IEDSSSFEPCD
        LKK ++ V S+ +LS F+      +S FPHSFN          F H +ERKYMFL+CNGIL  LA  S+                    +E S+SF    
Subjt:  LKKMVKFVFSVCVLSFFLA----IFSQFPHSFN----------FNHGMERKYMFLICNGILFLLATCSV--------------------IEDSSSFEPCD

Query:  YSFSHSDHDHDDHHQFEPLVAAIEEQNQ----EMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGRELEMVVSTEELNKKI
             S  DH DH+    LV   E  ++    E E EE EV  I+        EDE +    D+  +    + + EED     G   E V ST+ELN+K+
Subjt:  YSFSHSDHDHDDHHQFEPLVAAIEEQNQ----EMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGRELEMVVSTEELNKKI

Query:  EEFIRKMKEEMRIEAAQTQLIAV
        EEFIRKMKEE+RIEA Q  + A+
Subjt:  EEFIRKMKEEMRIEAAQTQLIAV

A0A6J1CN51 nardilysin-like4.6e-3048.32Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTI-SSWSSNSSKVESLKKMVKFVFSVC----VLSFFLAIFSQFPHSFN--------FNHGMERKYMFLICNGILFLLATC
        M+++P+A  LDS+ESLNLDG   ++W   SSKV+ LK MVKFV SVC    V++ FL++FS FPHSF          NH ++R YMFL+CNGIL LLAT 
Subjt:  MDQNPKAIKLDSNESLNLDGTI-SSWSSNSSKVESLKKMVKFVFSVC----VLSFFLAIFSQFPHSFN--------FNHGMERKYMFLICNGILFLLATC

Query:  SVIEDSSSFEPCDYSFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGR---ELE
        S ++ S+S                 HH +E      EE+ +E+E ++ +   I +             E+ED+   EGCF DE+EE+EEE +G+   ELE
Subjt:  SVIEDSSSFEPCDYSFSHSDHDHDDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGR---ELE

Query:  MVVSTEELNKKIEEFIRKMKEEMRIE---AAQTQLIAV
        +VVSTEELNKKIEEFIRKMKEEMRI+   AAQTQL+AV
Subjt:  MVVSTEELNKKIEEFIRKMKEEMRIE---AAQTQLIAV

A0A6J1EH25 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like3.4e-4155.6Show/hide
Query:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT
        M+   +AI +DS ESL+LD T    SS ++ VE LK+MVKF+ S+CV S  LA+    FS FPHSF            NHGMERK+MFLICNGILFLLAT
Subjt:  MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAI----FSQFPHSFN----------FNHGMERKYMFLICNGILFLLAT

Query:  CSVIED---SSSFEPCDYSFSHSDHDHDDHH-QFE-PLVA-------AIEEQNQEMETEEKEVEEIINGVQLDEDEDENED---EDEDEDENEGCFADEI
         SV++D   SSS      SF +S   H  HH QFE  LVA       + E + QE E  E E E+       DE EDE+ED   E E+++E+EGCF +E+
Subjt:  CSVIED---SSSFEPCDYSFSHSDHDHDDHH-QFE-PLVA-------AIEEQNQEMETEEKEVEEIINGVQLDEDEDENED---EDEDEDENEGCFADEI

Query:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV
         EE+EEEGK R+LE+VVSTEELNKKIEEFIRKMKEEMRIEAAQT QLIAV
Subjt:  -EEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQT-QLIAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13130.1 unknown protein9.9e-0935.03Show/hide
Query:  KVESLKKMVKFV-FSVCVLSFFLAIFSQFPHSFNF---NHGMERKYMFLICNGILFLLATCSVIEDSSSFEPCDYSFSHSD--HDHDDHHQFEPLVAAIE
        K E LKK+ KF+  S+ +LS  L     + + F      H +++ YMFL+CNG++ ++A CS +  SS  +P +  +S++D   D+ D   +  ++    
Subjt:  KVESLKKMVKFV-FSVCVLSFFLAIFSQFPHSFNF---NHGMERKYMFLICNGILFLLATCSVIEDSSSFEPCDYSFSHSD--HDHDDHHQFEPLVAAIE

Query:  EQNQEMETEEKEVEEIINGVQLDEDEDENEDED-EDEDENEGCFADEIEEDE---------EEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEA
        + +  + TE    EE    V ++ED    E ED E+ED+++   AD   E+E         EE +G    M  + EE+NKK +EFIRKMKEE+RIEA
Subjt:  EQNQEMETEEKEVEEIINGVQLDEDEDENEDED-EDEDENEGCFADEIEEDE---------EEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAAACCCAAAAGCCATAAAGTTGGATTCAAATGAAAGTTTGAATCTTGATGGTACAATTTCAAGTTGGAGTAGCAATAGCAGCAAAGTTGAGAGCTTGAAAAA
GATGGTGAAGTTTGTTTTTTCAGTTTGTGTTTTATCTTTTTTTTTAGCCATTTTCTCTCAGTTTCCTCATTCTTTCAATTTCAACCATGGCATGGAGAGAAAGTACATGT
TTTTAATTTGTAATGGAATCCTCTTTCTTCTAGCCACTTGTTCTGTAATTGAAGATTCTTCTTCTTTTGAGCCTTGTGATTATTCATTTTCCCACTCTGATCATGATCAT
GATGATCATCATCAATTTGAACCTCTTGTGGCTGCCATTGAAGAGCAAAATCAAGAAATGGAAACAGAAGAAAAAGAAGTTGAAGAAATTATTAATGGAGTTCAATTAGA
CGAAGACGAAGACGAAAACGAAGACGAAGATGAGGATGAAGATGAAAATGAAGGGTGTTTTGCAGATGAGATTGAAGAAGATGAAGAAGAAGGAAAAGGGAGGGAATTGG
AGATGGTGGTGAGTACAGAAGAATTGAATAAGAAAATAGAGGAGTTTATTAGGAAAATGAAAGAAGAAATGAGGATTGAAGCAGCTCAAACTCAGCTCATTGCAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAAAACCCAAAAGCCATAAAGTTGGATTCAAATGAAAGTTTGAATCTTGATGGTACAATTTCAAGTTGGAGTAGCAATAGCAGCAAAGTTGAGAGCTTGAAAAA
GATGGTGAAGTTTGTTTTTTCAGTTTGTGTTTTATCTTTTTTTTTAGCCATTTTCTCTCAGTTTCCTCATTCTTTCAATTTCAACCATGGCATGGAGAGAAAGTACATGT
TTTTAATTTGTAATGGAATCCTCTTTCTTCTAGCCACTTGTTCTGTAATTGAAGATTCTTCTTCTTTTGAGCCTTGTGATTATTCATTTTCCCACTCTGATCATGATCAT
GATGATCATCATCAATTTGAACCTCTTGTGGCTGCCATTGAAGAGCAAAATCAAGAAATGGAAACAGAAGAAAAAGAAGTTGAAGAAATTATTAATGGAGTTCAATTAGA
CGAAGACGAAGACGAAAACGAAGACGAAGATGAGGATGAAGATGAAAATGAAGGGTGTTTTGCAGATGAGATTGAAGAAGATGAAGAAGAAGGAAAAGGGAGGGAATTGG
AGATGGTGGTGAGTACAGAAGAATTGAATAAGAAAATAGAGGAGTTTATTAGGAAAATGAAAGAAGAAATGAGGATTGAAGCAGCTCAAACTCAGCTCATTGCAGTGTAA
Protein sequenceShow/hide protein sequence
MDQNPKAIKLDSNESLNLDGTISSWSSNSSKVESLKKMVKFVFSVCVLSFFLAIFSQFPHSFNFNHGMERKYMFLICNGILFLLATCSVIEDSSSFEPCDYSFSHSDHDH
DDHHQFEPLVAAIEEQNQEMETEEKEVEEIINGVQLDEDEDENEDEDEDEDENEGCFADEIEEDEEEGKGRELEMVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV