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Sed0004198 (gene) of Chayote v1 genome

Gene IDSed0004198
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L35a-1
Genome locationLG04:40518308..40520581
RNA-Seq ExpressionSed0004198
SyntenySed0004198
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR018266 - Ribosomal protein L35Ae, conserved site
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463199.1 PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo]4.0e-5696.43Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022139205.1 60S ribosomal protein L35a-1-like [Momordica charantia]1.3e-5492.86Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG +GERVRLY RGT+LGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022156899.1 60S ribosomal protein L35a-1 [Momordica charantia]9.8e-5593.75Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG +GERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022957040.1 60S ribosomal protein L35a-1 [Cucurbita moschata]1.0e-5697.32Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_038891868.1 60S ribosomal protein L35a-1 [Benincasa hispida]4.0e-5696.43Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

TrEMBL top hitse value%identityAlignment
A0A0A0KM11 Uncharacterized protein1.9e-5696.43Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A1S3CIN8 60S ribosomal protein L35a-11.9e-5696.43Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A5A7T1I6 Ribosomal protein L35A1.9e-5696.43Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A6J1GZF1 60S ribosomal protein L35a-15.1e-5797.32Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A6J1IM24 60S ribosomal protein L35a-1-like5.1e-5797.32Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV+RPHGNSG+VRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

SwissProt top hitse value%identityAlignment
P41056 60S ribosomal protein L33-B3.1e-2755.24Show/hide
Query:  ERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGDKVRVFM
        E  RLY +G  L Y+RSK    PN SL++IEGV +  E  +Y GKR+AY+Y+A  +  GS  R +WGKV+R HGNSGVVRA F++NLP K+ G  VR+F+
Subjt:  ERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGDKVRVFM

Query:  YPSNI
        YPSNI
Subjt:  YPSNI

P51422 60S ribosomal protein L35a-41.2e-5285.59Show/hide
Query:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD
        +KG QGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

Q9C912 60S ribosomal protein L35a-35.0e-5487.5Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

Q9FZH0 60S ribosomal protein L35a-29.5e-5385.59Show/hide
Query:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD
        +KG QGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

Q9LMK0 60S ribosomal protein L35a-15.0e-5487.5Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein3.6e-5587.5Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

AT1G41880.1 Ribosomal protein L35Ae family protein6.8e-5485.59Show/hide
Query:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD
        +KG QGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

AT1G74270.1 Ribosomal protein L35Ae family protein3.6e-5587.5Show/hide
Query:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

AT3G55750.1 Ribosomal protein L35Ae family protein8.8e-5485.59Show/hide
Query:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD
        +KG QGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV+RPHGNSGVVR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGGGAAGTCAGGGAGAGAGAGTCAGACTCTACACCAGAGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAAAT
TGAGGGCGTTAATTCTAAGGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATCTATAAGGCTAAGGTGAAGAAGAACGGATCCCATTATCGTTGCATTTGGG
GCAAGGTCTCTAGGCCTCATGGAAACAGCGGCGTGGTTAGAGCTAAGTTCAAGTCTAACTTGCCACCGAAGTCCATGGGTGACAAAGTCAGAGTATTCATGTACCCCAGC
AACATTTAA
mRNA sequenceShow/hide mRNA sequence
CTCAGAACTAGGGTTTTGAAGAGCGATACGCAAGTTCGTCACTTCGTCGGCCGTAGAAACCTTGAAACTGAAGGATCAAGCCGACGCCGGAGATGGTGAAGGGAAGTCAG
GGAGAGAGAGTCAGACTCTACACCAGAGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAAATTGAGGGCGTTAATTCTAA
GGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATCTATAAGGCTAAGGTGAAGAAGAACGGATCCCATTATCGTTGCATTTGGGGCAAGGTCTCTAGGCCTC
ATGGAAACAGCGGCGTGGTTAGAGCTAAGTTCAAGTCTAACTTGCCACCGAAGTCCATGGGTGACAAAGTCAGAGTATTCATGTACCCCAGCAACATTTAAGATATGAAC
CTGGAAGCAACGAGGAGTTGTGAACTGAGTATTAATTTTATAATATTTTGTGAGCTAAGATAGTAGCATCTTTTTTTTTTTTCTGAACGAAGTGATTTTTGGTATTTAGT
CATTTCACCATCAAGTAGTTGAACATAATTTTAAATCCTTATGCCTCGGTCATTTTCTTTTGTTAAGCGATTTAGTTGATCCTGCCCTCTACGCAGTCTTTGCCCTTTCA
GTGATTATGAAGTTAGGGCAGTTCTCATCATCGTTGGTTGTGTTCAATCGTCCTTTCTTCACTACCTTATTACTTCCTAATCTAGAACTTCTTTGATAGGTTCTATAACA
TTTGCTATAACAGCTATATCTGCCCCAATTCTTAACTTGATTTTCCTTCGCCCCTAAACATAGCCATTAACTTCAGATTTATTTCTAACGCTTACAATTCTTGCAACTTT
TAGTCAAATGCCAACGAGAAAATCTCTTCTTCTATACTTCCAAGAATCTTCTGGATGTCTTGTATCTGAATATCCA
Protein sequenceShow/hide protein sequence
MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVSRPHGNSGVVRAKFKSNLPPKSMGDKVRVFMYPS
NI