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Sed0004206 (gene) of Chayote v1 genome

Gene IDSed0004206
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:39136928..39137421
RNA-Seq ExpressionSed0004206
SyntenySed0004206
Gene Ontology termsGO:0005488 - binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEW99543.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium]1.1e-2356.25Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA--------------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQP
        +MSYLQGQDLWE+V GS+TT P  EDANG L+KWK++A                                EARMKRIIIHGL+  YRSF+ AVQGWPTQP
Subjt:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA--------------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQP

Query:  SLVEFENLLASQ
        SL EFENLLASQ
Subjt:  SLVEFENLLASQ

KAE8668864.1 tir-nbs resistance protein [Hibiscus syriacus]3.5e-2252Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYR
        M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                                             EAR+KRIIIHGLRP YR
Subjt:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYR

Query:  SFIIAVQGWPTQPSLVEFENLLASQ
         F+ AVQGWPTQPSL+EF+NLLA Q
Subjt:  SFIIAVQGWPTQPSLVEFENLLASQ

KAG6526559.1 hypothetical protein ZIOFF_016550 [Zingiber officinale]1.4e-2353.23Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYRS
        M SYLQGQDLWEVVGGSE T P EDAN  LRKWKIKA                                             EAR+KRIIIHGLRP YR 
Subjt:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYRS

Query:  FIIAVQGWPTQPSLVEFENLLASQ
        FI A+QGWPTQPSL+EFENLLA Q
Subjt:  FIIAVQGWPTQPSLVEFENLLASQ

XP_023749568.1 uncharacterized protein LOC111897860 [Lactuca sativa]3.1e-2344.51Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK----------------------------------------------------------------
        M SYLQGQDLWEVVGGSETTPPEED NGALRKWKIK                                                                
Subjt:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK----------------------------------------------------------------

Query:  ---------------------AEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ
                             AEARMKRIIIHGLRP YRSF+ AVQGWP QPSLVEFENLLASQ
Subjt:  ---------------------AEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ

XP_023761520.1 uncharacterized protein LOC111909959 [Lactuca sativa]3.1e-2344.51Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK----------------------------------------------------------------
        M SYLQGQDLWEVVGGSETTPPEED NGALRKWKIK                                                                
Subjt:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK----------------------------------------------------------------

Query:  ---------------------AEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ
                             AEARMKRIIIHGLRP YRSF+ AVQGWP QPSLVEFENLLASQ
Subjt:  ---------------------AEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ

TrEMBL top hitse value%identityAlignment
A0A6A2X170 Uncharacterized protein2.2e-2250.77Show/hide
Query:  MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL
        M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                                                  EAR+KRII+HGL
Subjt:  MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL

Query:  RPGYRSFIIAVQGWPTQPSLVEFENLLASQ
        RP YR F+ AVQGWPTQPSLVEFENLLA Q
Subjt:  RPGYRSFIIAVQGWPTQPSLVEFENLLASQ

A0A6A2YC05 Tir-nbs resistance protein1.7e-2252Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYR
        M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                                             EAR+KRIIIHGLRP YR
Subjt:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------------------------------EARMKRIIIHGLRPGYR

Query:  SFIIAVQGWPTQPSLVEFENLLASQ
         F+ AVQGWPTQPSL+EF+NLLA Q
Subjt:  SFIIAVQGWPTQPSLVEFENLLASQ

A0A6A2ZHK8 Abscisic acid 8'-hydroxylase 11.4e-2150Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL
        M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                                                  EAR+KRII+HGL
Subjt:  MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL

Query:  RPGYRSFIIAVQGWPTQPSLVEFENLLASQ
        RP YR F+ AVQGWPTQP LVEFENLLA Q
Subjt:  RPGYRSFIIAVQGWPTQPSLVEFENLLASQ

A0A6A3AIG6 PLAC8 family protein8.3e-2250.78Show/hide
Query:  MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL
        M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                                                  EAR+KRII+HGL
Subjt:  MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA--------------------------------------------------EARMKRIIIHGL

Query:  RPGYRSFIIAVQGWPTQPSLVEFENLLA
        RP YR F+ AVQGWPTQPSLVEFENLLA
Subjt:  RPGYRSFIIAVQGWPTQPSLVEFENLLA

A0A6J5VBA9 DUF4219 domain-containing protein1.4e-2146.88Show/hide
Query:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA-------------------------------------------------EARMKRIIIHGLRP
        M SYLQG+DLW+V+GG+E T P+ED NG LRKWKIKA                                                 ++R+KRIIIHGLRP
Subjt:  MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA-------------------------------------------------EARMKRIIIHGLRP

Query:  GYRSFIIAVQGWPTQPSLVEFENLLASQ
         Y  FI  VQGWPTQPSLVEFENLLA+Q
Subjt:  GYRSFIIAVQGWPTQPSLVEFENLLASQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCCTACTTGCAAGGGCAAGACCTATGGGAGGTCGTTGGCGGGAGTGAAACTACGCCGCCAGAGGAGGATGCTAATGGCGCTTTGCGAAAATGGAAAATCAAAGC
AGAAGCTCGGATGAAGAGGATCATCATCCACGGATTGCGACCGGGGTATAGAAGCTTCATCATTGCTGTACAAGGATGGCCTACCCAACCATCACTTGTAGAGTTCGAAA
ATTTGCTAGCCAGTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTCCTACTTGCAAGGGCAAGACCTATGGGAGGTCGTTGGCGGGAGTGAAACTACGCCGCCAGAGGAGGATGCTAATGGCGCTTTGCGAAAATGGAAAATCAAAGC
AGAAGCTCGGATGAAGAGGATCATCATCCACGGATTGCGACCGGGGTATAGAAGCTTCATCATTGCTGTACAAGGATGGCCTACCCAACCATCACTTGTAGAGTTCGAAA
ATTTGCTAGCCAGTCAATAA
Protein sequenceShow/hide protein sequence
MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKAEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ