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Sed0004234 (gene) of Chayote v1 genome

Gene IDSed0004234
OrganismSechium edule (Chayote v1)
DescriptionMembrane lipoprotein, putative
Genome locationLG01:330153..330589
RNA-Seq ExpressionSed0004234
SyntenySed0004234
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040748.1 hypothetical protein E6C27_scaffold703G00110 [Cucumis melo var. makuwa]1.0e-3759.6Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN
        MSLVNPSAGRAFIW +TCFLFFSI+ GGGCLLMYMILPE+E+T WL +TG SLVCLPWFFW LT   R++SRACG+RVSLG   + G   +    N N N
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN

Query:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        +++SAESP+ D G R              S S+NS+ S ESE  LAITM S
Subjt:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

XP_008460874.1 PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo]1.3e-3759.6Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN
        MSLVNPSAGRAFIW +TCFLFFSI+ GGGCLLMYMILPE+E+T WL +TG SLVCLPWFFW LT   R++SRACG+RVSLG   + G   +    N N N
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN

Query:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        +++SAESP+ D G R              S S+NS+ S ESE  LAITM S
Subjt:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

XP_011649431.1 putative uncharacterized protein DDB_G0284715 [Cucumis sativus]1.5e-3862.67Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGI--CMNEGAMAIYNANGND
        MSLVNPSAGRAFIW +TCFLFFSIL GGGCLLMYMILPETETT WL +TG SLVCLPWFFW LT   R++SRACGFRVSLGI   ++       N N N+
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGI--CMNEGAMAIYNANGND

Query:  SASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        ++SAES Q D G R              S S+NS+ S ESE  LAITM S
Subjt:  SASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

XP_022947828.1 uncharacterized protein LOC111451588 [Cucurbita moschata]6.5e-3760.96Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA
        MSLV+PS GR  IW +T  LF S+L GGGCLLMY+ LPETE T WL V G SLVCLPWFFWFLT L RI+SRACGFRVSLG+ +NE A A  N N +++ 
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA

Query:  SAESPQDDAGVRRSK-----------SSNSVASCESEKSLAITMGS
          ESPQ DAG + +K           S++S AS ESEK LAITMGS
Subjt:  SAESPQDDAGVRRSK-----------SSNSVASCESEKSLAITMGS

XP_038900833.1 uncharacterized protein LOC120087896 [Benincasa hispida]1.3e-4064.24Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGA--MAIYNANGND
        MSLVNPSAGRAFIW +TCFLFFSI+ GGGCLLMYMILPETETT WL V G SLVCLPWFFW LT   R++SRACGFRVS+GI ++ GA      N N N+
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGA--MAIYNANGND

Query:  SASAESPQDDAGVR--------------RSKSSNSVASCESEKSLAITMGS
        +ASAESP+ D G R               S S+NS+AS ESE  LAITMGS
Subjt:  SASAESPQDDAGVR--------------RSKSSNSVASCESEKSLAITMGS

TrEMBL top hitse value%identityAlignment
A0A0A0LJX6 Uncharacterized protein7.5e-3962.67Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGI--CMNEGAMAIYNANGND
        MSLVNPSAGRAFIW +TCFLFFSIL GGGCLLMYMILPETETT WL +TG SLVCLPWFFW LT   R++SRACGFRVSLGI   ++       N N N+
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGI--CMNEGAMAIYNANGND

Query:  SASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        ++SAES Q D G R              S S+NS+ S ESE  LAITM S
Subjt:  SASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

A0A1S3CDW9 Uncharacterized protein6.3e-3859.6Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN
        MSLVNPSAGRAFIW +TCFLFFSI+ GGGCLLMYMILPE+E+T WL +TG SLVCLPWFFW LT   R++SRACG+RVSLG   + G   +    N N N
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN

Query:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        +++SAESP+ D G R              S S+NS+ S ESE  LAITM S
Subjt:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

A0A5A7TCV0 Uncharacterized protein4.9e-3859.6Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN
        MSLVNPSAGRAFIW +TCFLFFSI+ GGGCLLMYMILPE+E+T WL +TG SLVCLPWFFW LT   R++SRACG+RVSLG   + G   +    N N N
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAI---YNANGN

Query:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS
        +++SAESP+ D G R              S S+NS+ S ESE  LAITM S
Subjt:  DSASAESPQDDAGVR-------------RSKSSNSVASCESEKSLAITMGS

A0A6J1D6I2 uncharacterized protein LOC1110175031.8e-3257.24Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA
        MSLV+PS GRAFIW IT FLFF IL GGGCL+MYMILPETETT WL + G SLVCLPWFFW LT   R++SRACGFRVSLG+ + +G   + NA+     
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA

Query:  SAESPQDD----AGV------RRSKSSNSVASCESEKSLAITMGS
              DD     G+        S S NS  S ESE  LAITM S
Subjt:  SAESPQDD----AGV------RRSKSSNSVASCESEKSLAITMGS

A0A6J1G7P7 uncharacterized protein LOC1114515883.1e-3760.96Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA
        MSLV+PS GR  IW +T  LF S+L GGGCLLMY+ LPETE T WL V G SLVCLPWFFWFLT L RI+SRACGFRVSLG+ +NE A A  N N +++ 
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSA

Query:  SAESPQDDAGVRRSK-----------SSNSVASCESEKSLAITMGS
          ESPQ DAG + +K           S++S AS ESEK LAITMGS
Subjt:  SAESPQDDAGVRRSK-----------SSNSVASCESEKSLAITMGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30770.1 Putative membrane lipoprotein6.5e-1943.9Show/hide
Query:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGN---
        M + +P AG+AFI  IT FLF SI  GGGCL+ Y ILP      WL   G   VCLPWFFW LT   RIVSR  GFR+ +G   N       NANG    
Subjt:  MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGN---

Query:  -----DSASAESPQDD--------------------AGVRRSKSSNS-VASCESEKSLAITMGS
                S ESP DD                    +  R S SSNS +AS ESE  LAI+M S
Subjt:  -----DSASAESPQDD--------------------AGVRRSKSSNS-VASCESEKSLAITMGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTGGTCAATCCATCAGCTGGACGTGCATTCATATGGTTCATCACTTGTTTTCTCTTCTTCTCTATTCTAGGCGGTGGGGGATGCCTATTGATGTACATGATCCT
GCCAGAGACCGAAACAACCACATGGTTACGGGTTACAGGCTTTTCGTTGGTCTGTCTTCCTTGGTTTTTTTGGTTCTTAACTTTACTTGATAGAATCGTGTCACGGGCAT
GTGGCTTTAGAGTCTCCCTTGGTATATGTATGAACGAAGGTGCAATGGCCATATATAATGCAAATGGCAATGATAGTGCATCTGCGGAATCCCCACAAGATGATGCAGGG
GTCAGGCGAAGCAAGTCATCCAACTCAGTAGCGTCCTGTGAAAGTGAAAAGTCGTTAGCCATAACAATGGGGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTGGTCAATCCATCAGCTGGACGTGCATTCATATGGTTCATCACTTGTTTTCTCTTCTTCTCTATTCTAGGCGGTGGGGGATGCCTATTGATGTACATGATCCT
GCCAGAGACCGAAACAACCACATGGTTACGGGTTACAGGCTTTTCGTTGGTCTGTCTTCCTTGGTTTTTTTGGTTCTTAACTTTACTTGATAGAATCGTGTCACGGGCAT
GTGGCTTTAGAGTCTCCCTTGGTATATGTATGAACGAAGGTGCAATGGCCATATATAATGCAAATGGCAATGATAGTGCATCTGCGGAATCCCCACAAGATGATGCAGGG
GTCAGGCGAAGCAAGTCATCCAACTCAGTAGCGTCCTGTGAAAGTGAAAAGTCGTTAGCCATAACAATGGGGTCATAA
Protein sequenceShow/hide protein sequence
MSLVNPSAGRAFIWFITCFLFFSILGGGGCLLMYMILPETETTTWLRVTGFSLVCLPWFFWFLTLLDRIVSRACGFRVSLGICMNEGAMAIYNANGNDSASAESPQDDAG
VRRSKSSNSVASCESEKSLAITMGS