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Sed0004237 (gene) of Chayote v1 genome

Gene IDSed0004237
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 4
Genome locationLG06:8106715..8107164
RNA-Seq ExpressionSed0004237
SyntenySed0004237
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIM01372.1 hypothetical protein Vretimale_6198, partial [Volvox reticuliferus]5.9e-0449.46Show/hide
Query:  PATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSPSPFAPPPSDLPPSKALAP
        P  SP P  SPSPP   +P   P PP  L P+P+   PP PP   PPSP   + PPS  P   P S P P PPSPSP +PPPS  PPS   +P
Subjt:  PATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSPSPFAPPPSDLPPSKALAP

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]5.9e-1254.17Show/hide
Query:  MPPSALLTALFAAALLLSAAAI--SPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSP
        MP S LL AL AAALL SAAAI  SP+ SPTP AS SPPWRW PITKP    +  P P+  T P  P   PPSP     PP+    P     P  QP SP
Subjt:  MPPSALLTALFAAALLLSAAAI--SPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSP

Query:  SPFAPPPSDLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
        SP +P     PPS+AL+PSK K+  F N  S VGSVA+GAMA A
Subjt:  SPFAPPPSDLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

XP_022141995.1 extensin-like [Momordica charantia]7.7e-1253.52Show/hide
Query:  AAALLLSAAAI-SPATSPTPAASPSPPWRWTPITK-PHPPLSLSPAPALATPPVPPSALPPSPLGFA-----APPSFSPAPAPASTPVPQPP--SPSPFA
        AAALL SAAA   PA SP+P A+PSPPWRWTP  K P PP S SPAP  +  P PPS+  PSP         APP+ +P   P  T  P PP   P   A
Subjt:  AAALLLSAAAI-SPATSPTPAASPSPPWRWTPITK-PHPPLSLSPAPALATPPVPPSALPPSPLGFA-----APPSFSPAPAPASTPVPQPP--SPSPFA

Query:  PPPSDL--PPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
        P PS +  PP+ ALAPSK K++A  NR S VGSV +GAMA A
Subjt:  PPPSDL--PPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]2.8e-1456.86Show/hide
Query:  MPPSALLTALFAAALLLSAAAI-SPATSP----TPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGF-AAPPSFSPAPA--PASTPV
        MP SALL AL AAALL SAAA  +PA SP    TP ASPSPPWRWTPITKP PP S     +  TP  PPS+ PP+P      PP    AP   P S P+
Subjt:  MPPSALLTALFAAALLLSAAAI-SPATSP----TPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGF-AAPPSFSPAPA--PASTPV

Query:  PQPPSPSPFAPPPS--DLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVAL
         + PSPSP +P PS   +PP +A APSK K+ AFNNR S V SVA+ AMA AL
Subjt:  PQPPSPSPFAPPPS--DLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVAL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein2.9e-1254.17Show/hide
Query:  MPPSALLTALFAAALLLSAAAI--SPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSP
        MP S LL AL AAALL SAAAI  SP+ SPTP AS SPPWRW PITKP    +  P P+  T P  P   PPSP     PP+    P     P  QP SP
Subjt:  MPPSALLTALFAAALLLSAAAI--SPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSP

Query:  SPFAPPPSDLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
        SP +P     PPS+AL+PSK K+  F N  S VGSVA+GAMA A
Subjt:  SPFAPPPSDLPPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

A0A1S3CHW9 classical arabinogalactan protein 44.9e-0438.42Show/hide
Query:  MPPSALLTALFAAALLLSAAAISPATSPTPAASPSPPWRWTPITKP-------HPPLS-----------------LSPAPALATPPVPPSALPPSPLGFA
        M  S LL  L  A LL+SAAA SPA SP P+A  SP W+WTP  +P        PP++                 LSP P+  +P  PP A PP+    A
Subjt:  MPPSALLTALFAAALLLSAAAISPATSPTPAASPSPPWRWTPITKP-------HPPLS-----------------LSPAPALATPPVPPSALPPSPLGFA

Query:  APP---SFSPAPAPASTPVPQPPSPSPFAPPPSDLP---------------------PSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
         PP   S S AP+PA T  P  P+PS  +P P+  P                     PS+A APSKE N A  NR +  GS+A G M  A
Subjt:  APP---SFSPAPAPASTPVPQPPSPSPFAPPPSDLP---------------------PSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

A0A5A7V3Q7 Classical arabinogalactan protein 44.9e-0438.42Show/hide
Query:  MPPSALLTALFAAALLLSAAAISPATSPTPAASPSPPWRWTPITKP-------HPPLS-----------------LSPAPALATPPVPPSALPPSPLGFA
        M  S LL  L  A LL+SAAA SPA SP P+A  SP W+WTP  +P        PP++                 LSP P+  +P  PP A PP+    A
Subjt:  MPPSALLTALFAAALLLSAAAISPATSPTPAASPSPPWRWTPITKP-------HPPLS-----------------LSPAPALATPPVPPSALPPSPLGFA

Query:  APP---SFSPAPAPASTPVPQPPSPSPFAPPPSDLP---------------------PSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
         PP   S S AP+PA T  P  P+PS  +P P+  P                     PS+A APSKE N A  NR +  GS+A G M  A
Subjt:  APP---SFSPAPAPASTPVPQPPSPSPFAPPPSDLP---------------------PSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

A0A6J1CJN4 extensin-like3.7e-1253.52Show/hide
Query:  AAALLLSAAAI-SPATSPTPAASPSPPWRWTPITK-PHPPLSLSPAPALATPPVPPSALPPSPLGFA-----APPSFSPAPAPASTPVPQPP--SPSPFA
        AAALL SAAA   PA SP+P A+PSPPWRWTP  K P PP S SPAP  +  P PPS+  PSP         APP+ +P   P  T  P PP   P   A
Subjt:  AAALLLSAAAI-SPATSPTPAASPSPPWRWTPITK-PHPPLSLSPAPALATPPVPPSALPPSPLGFA-----APPSFSPAPAPASTPVPQPP--SPSPFA

Query:  PPPSDL--PPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA
        P PS +  PP+ ALAPSK K++A  NR S VGSV +GAMA A
Subjt:  PPPSDL--PPSKALAPSKEKNSAFNNRLSFVGSVAVGAMAVA

SwissProt top hitse value%identityAlignment
Q9FPQ6 Vegetative cell wall protein gp14.3e-0549.49Show/hide
Query:  ISPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAP---PSFSPAPAPASTPVPQPPSPSPFAP----PPSDLPPSKA
        + P+ SP    SP+PP    P   P PP+  SPAP    PPVPPS  PPSP     P   P   P+PAP S P P PPSPSP AP    PPS  PPS A
Subjt:  ISPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAP---PSFSPAPAPASTPVPQPPSPSPFAP----PPSDLPPSKA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCCTCAGCCCTTCTCACCGCCCTCTTTGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTATCTCTCCGGCGACGTCGCCAACTCCGGCGGCCTCCCCCTCTCCGCC
GTGGAGATGGACCCCCATCACAAAGCCTCATCCACCGCTGTCATTGTCGCCTGCGCCGGCACTGGCGACCCCTCCAGTTCCGCCGTCCGCTCTGCCTCCGTCTCCGTTGG
GGTTCGCTGCTCCTCCGTCATTTTCCCCGGCGCCGGCACCGGCGTCCACTCCAGTTCCGCAGCCGCCAAGCCCTTCTCCGTTCGCCCCTCCGCCGTCCGATCTGCCTCCG
TCAAAAGCGCTGGCGCCGTCGAAAGAGAAGAACAGCGCTTTTAATAACAGATTATCATTTGTTGGATCGGTGGCTGTTGGAGCCATGGCGGTTGCTCTGTTTTAG
mRNA sequenceShow/hide mRNA sequence
TTCACGTCATCAAACATGCCTCCCTCAGCCCTTCTCACCGCCCTCTTTGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTATCTCTCCGGCGACGTCGCCAACTCCGGCGGC
CTCCCCCTCTCCGCCGTGGAGATGGACCCCCATCACAAAGCCTCATCCACCGCTGTCATTGTCGCCTGCGCCGGCACTGGCGACCCCTCCAGTTCCGCCGTCCGCTCTGC
CTCCGTCTCCGTTGGGGTTCGCTGCTCCTCCGTCATTTTCCCCGGCGCCGGCACCGGCGTCCACTCCAGTTCCGCAGCCGCCAAGCCCTTCTCCGTTCGCCCCTCCGCCG
TCCGATCTGCCTCCGTCAAAAGCGCTGGCGCCGTCGAAAGAGAAGAACAGCGCTTTTAATAACAGATTATCATTTGTTGGATCGGTGGCTGTTGGAGCCATGGCGGTTGC
TCTGTTTTAG
Protein sequenceShow/hide protein sequence
MPPSALLTALFAAALLLSAAAISPATSPTPAASPSPPWRWTPITKPHPPLSLSPAPALATPPVPPSALPPSPLGFAAPPSFSPAPAPASTPVPQPPSPSPFAPPPSDLPP
SKALAPSKEKNSAFNNRLSFVGSVAVGAMAVALF