CuGenDBv2

Gene ID	Sed0004238
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF1118)
Genome location	LG01:17343349..17344441
RNA-Seq Expression	Sed0004238
Synteny	Sed0004238
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0010196 - nonphotochemical quenching (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0090391 - granum assembly (biological process) GO:0009515 - granal stacked thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR009500 - Protein of unknown function DUF1118

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137438.1 uncharacterized protein LOC101204037 [Cucumis sativus]

2.7e-70

83.42

Show/hide

Query:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG
        M V SFC  SSS+RAAS IY                 SMA EKP  SAAKTVGSKKINTTVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSKAEKAG
Subjt:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG

Query:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQ AVALVS+VGGSAAFAASNLVSNLQRS+
Subjt:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

XP_008451074.1 PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo]

1.6e-70

83.42

Show/hide

Query:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG
        M V SFC  SSS+RAAS IY                 SMAAEKP  SA+KTVGSKKINTTVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSKAEKAG
Subjt:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG

Query:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQ AVALVS+VGGSAAFAASNLVSNLQRS+
Subjt:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

XP_022137623.1 uncharacterized protein LOC111009021 [Momordica charantia]

7.3e-68

80.6

Show/hide

Query:  MAVASFCTSS-------------------SSSRAASLIYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEK
        M V SFC+SS                    S+ +  L+ SMAAEKP  SAAKTVGSKKIN+TVFPLGEKGPRS +SLSTSP IKLLTRVEQLKLLSKAEK
Subjt:  MAVASFCTSS-------------------SSSRAASLIYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEK

Query:  AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS
        AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQAAVALVSVVGGSAAFAASNLVSNLQRS
Subjt:  AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS

Query:  S
        +
Subjt:  S

XP_023541355.1 uncharacterized protein LOC111801557 [Cucurbita pepo subsp. pepo]

6.2e-67

78.43

Show/hide

Query:  MAVASFCTSSSSSRAASLIYS----------------------MAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSK
        M +AS    +SS+RAAS IYS                      MAAEKP  SA KT+GSKKIN+TVFPLGEKGPRS +SLSTSPPIKLLTRVEQL+LLSK
Subjt:  MAVASFCTSSSSSRAASLIYS----------------------MAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSK

Query:  AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNL
        AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELG+LSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQAA ALVSVVGGSAAFAASNLVSNL
Subjt:  AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNL

Query:  QRSS
        QRS+
Subjt:  QRSS

XP_038893804.1 uncharacterized protein LOC120082623 [Benincasa hispida]

3.0e-69

82.56

Show/hide

Query:  MAVASFCTSS------------SSSRAASL-IYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA
        M V+SFC+SS            ++SR  SL ++SMAAEKP  SAAKTVGSKKIN+TVFPLGEKGPR+ +SLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA
Subjt:  MAVASFCTSS------------SSSRAASL-IYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAGLLSA

Query:  AEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        AEKAGLSLSSIEKLGLLSKAEELG+LSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVW+IALQ +VALVSVVGGSAAFAASNLVSNLQRS+
Subjt:  AEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQ98 Uncharacterized protein

1.3e-70

83.42

Show/hide

Query:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG
        M V SFC  SSS+RAAS IY                 SMA EKP  SAAKTVGSKKINTTVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSKAEKAG
Subjt:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG

Query:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQ AVALVS+VGGSAAFAASNLVSNLQRS+
Subjt:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

A0A1S3BQ40 uncharacterized protein LOC103492437

7.7e-71

83.42

Show/hide

Query:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG
        M V SFC  SSS+RAAS IY                 SMAAEKP  SA+KTVGSKKINTTVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSKAEKAG
Subjt:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG

Query:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQ AVALVS+VGGSAAFAASNLVSNLQRS+
Subjt:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

A0A5D3BGQ3 Uncharacterized protein

7.7e-71

83.42

Show/hide

Query:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG
        M V SFC  SSS+RAAS IY                 SMAAEKP  SA+KTVGSKKINTTVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSKAEKAG
Subjt:  MAVASFCTSSSSSRAASLIY-----------------SMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAG

Query:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS
        LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQ AVALVS+VGGSAAFAASNLVSNLQRS+
Subjt:  LLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

A0A6J1CAU4 uncharacterized protein LOC111009021

3.6e-68

80.6

Show/hide

Query:  MAVASFCTSS-------------------SSSRAASLIYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEK
        M V SFC+SS                    S+ +  L+ SMAAEKP  SAAKTVGSKKIN+TVFPLGEKGPRS +SLSTSP IKLLTRVEQLKLLSKAEK
Subjt:  MAVASFCTSS-------------------SSSRAASLIYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEK

Query:  AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS
        AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSL LGLLLLGPSCVYLVPEDSVWEI LQAAVALVSVVGGSAAFAASNLVSNLQRS
Subjt:  AGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS

Query:  S
        +
Subjt:  S

A0A6J1K230 uncharacterized protein LOC111490350

5.1e-67

78.43

Show/hide

Query:  MAVASFCTSSSSSRAASLIYS----------------------MAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSK
        M VAS    +SS+RAAS IYS                      MAAEKP  SA KT+GSKKIN+TVFPLGEKGPRS +SLSTSPPIKLLTRVEQLKLLSK
Subjt:  MAVASFCTSSSSSRAASLIYS----------------------MAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSK

Query:  AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNL
        AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELG+LSAATDPGTPGALLSL LGLLLLGPSCVYLVPED+VWEI LQAA ALVSV+GGSAAFAASNLVSNL
Subjt:  AEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNL

Query:  QRSS
        QRS+
Subjt:  QRSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G74730.1 Protein of unknown function (DUF1118)

7.4e-10

39.17

Show/hide

Query:  IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATD-PGT-PGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVS
        + +  ++E+ K+LS  EK+GLLS AE  GL+LSS+EKL + SKAE+LG+LS   +  GT P  L S  L  L      V L+P+DS   +  QA +A   
Subjt:  IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATD-PGT-PGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVS

Query:  VVGGSAAFAASNLVSNLQRS
         + G      S ++  LQ +
Subjt:  VVGGSAAFAASNLVSNLQRS

AT5G08050.1 Protein of unknown function (DUF1118)

1.4e-40

58.24

Show/hide

Query:  MAVASFCTSSSSSRAASLIYSMAAEKPSISAA-KTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIE
        MA    C+S +       ++SMA +KPS SAA +T+ SKK   T                  P +KLLTRVEQLKLL+KAEKAGLLS AEK+G SLS+IE
Subjt:  MAVASFCTSSSSSRAASLIYSMAAEKPSISAA-KTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIE

Query:  KLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS
        +LGLL+KAEE GVLSAAT+P TPG L +L LGLLLLGP   Y+VPED  WE+ +Q  VAL+SV+GGSAAFAAS  VSNLQ+S
Subjt:  KLGLLSKAEELGVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGTCGCATCTTTCTGCACCAGCAGCAGCAGCAGCCGAGCAGCTTCACTCATCTACTCCATGGCCGCCGAGAAACCCTCCATTTCCGCCGCCAAAACCGTCGGCTC
CAAGAAGATAAACACGACGGTGTTCCCGCTCGGGGAGAAAGGACCGAGGAGCGGCGTCTCGCTCTCGACCTCGCCTCCGATCAAGCTTCTGACTAGAGTGGAGCAGTTGA
AGCTGCTGAGCAAGGCGGAGAAGGCCGGGCTGCTGTCGGCGGCGGAGAAGGCGGGGCTGTCCCTGTCGTCGATCGAGAAGTTAGGGCTTCTGTCGAAGGCGGAGGAATTG
GGGGTTTTATCGGCGGCGACGGATCCGGGAACGCCGGGGGCGCTGCTGAGCCTAGGGTTAGGGCTGTTGCTTTTAGGGCCTTCGTGTGTGTATTTGGTGCCGGAGGACAG
TGTTTGGGAAATCGCGTTGCAGGCGGCGGTGGCGCTCGTCTCCGTCGTCGGCGGCTCTGCGGCCTTTGCTGCCTCCAATTTGGTTTCTAATTTGCAGAGATCGAGTTGA

mRNA sequence

Show/hide mRNA sequence

GACAGAGTAAACTTTTCTTATTAAATTGAAGCATTAAAAATGATACATTTACAAAAATGGAAAAGTTTATGCTTCACAACATTTATAAACTCACCAATAAAACGAGCACA
CGTGGATGATAATCCAATATCTCAAATACTCAAAGACCAATCCAAACACCTTCCTTCTCCATCATTCATTTCCCCGGTGCGGGTCTCTGCAATTCACTCATTTTGCCCTA
ATCGCCGCCATTGTTAACACTCACACAGAGCTCTACCAAGGAACTCACGGACATGGCGGTCGCATCTTTCTGCACCAGCAGCAGCAGCAGCCGAGCAGCTTCACTCATCT
ACTCCATGGCCGCCGAGAAACCCTCCATTTCCGCCGCCAAAACCGTCGGCTCCAAGAAGATAAACACGACGGTGTTCCCGCTCGGGGAGAAAGGACCGAGGAGCGGCGTC
TCGCTCTCGACCTCGCCTCCGATCAAGCTTCTGACTAGAGTGGAGCAGTTGAAGCTGCTGAGCAAGGCGGAGAAGGCCGGGCTGCTGTCGGCGGCGGAGAAGGCGGGGCT
GTCCCTGTCGTCGATCGAGAAGTTAGGGCTTCTGTCGAAGGCGGAGGAATTGGGGGTTTTATCGGCGGCGACGGATCCGGGAACGCCGGGGGCGCTGCTGAGCCTAGGGT
TAGGGCTGTTGCTTTTAGGGCCTTCGTGTGTGTATTTGGTGCCGGAGGACAGTGTTTGGGAAATCGCGTTGCAGGCGGCGGTGGCGCTCGTCTCCGTCGTCGGCGGCTCT
GCGGCCTTTGCTGCCTCCAATTTGGTTTCTAATTTGCAGAGATCGAGTTGAATTCCGGCCGGTCATGGAGTTTTCCGGCCATCTCTCTGTATCATCCTTTCGGTATCTCT
CTTTGTCGTTTTGTGTTCCGCTATTATTTTTATTTTTATCGTTTTCTATCGGATTAAAATAGTGAATTTGTGAATGCAAATATTCTGCTCTCTATATTATACCAAAATCG
ATTTGGTGACACAATTAAAAAAGGACACATTT

Protein sequence

Show/hide protein sequence

MAVASFCTSSSSSRAASLIYSMAAEKPSISAAKTVGSKKINTTVFPLGEKGPRSGVSLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEEL
GVLSAATDPGTPGALLSLGLGLLLLGPSCVYLVPEDSVWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSS

Sed0004238 (gene) of Chayote v1 genome