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Sed0004251 (gene) of Chayote v1 genome

Gene IDSed0004251
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL2-like
Genome locationLG01:66875384..66876171
RNA-Seq ExpressionSed0004251
SyntenySed0004251
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159502.1 RING-H2 finger protein ATL2-like [Momordica charantia]9.6e-5966.29Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQP-PPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRK-----
        MGFLYFA NG RCSQILHFFTGI  RLK +  + G+L P P+QP      VDRPTSYVF+TEG CPSLVTVPATDLQARIK SLP+VEFGDF  K     
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQP-PPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRK-----

Query:  -----QGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
             +   E    RCTICL +ME+ E MREL+NCCHVFH+ECLDTWIDEFQI CP+CRS+L P G GDG R+FR
Subjt:  -----QGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]9.0e-5767.84Show/hide
Query:  MGFLYFATNGQRCSQILH-FFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG---
        MGFL+FA N Q  SQILH  FT ILL+ KL+AAHFGL+ PSPE     S  +RPTSYV LTEG  PSLVTVPA DLQ RIK SLP++E+GDFV KQG   
Subjt:  MGFLYFATNGQRCSQILH-FFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG---

Query:  ---TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
            V+  + +CTICLCEMER E+MREL NCCHVFHR+CLDTWIDEF+I CPVCRS+LFP G GDGF F R
Subjt:  ---TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

XP_023520502.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]8.1e-5870.18Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVEL
        MGF  FA NG RC QILHFFT ILL LKL+AA FGLL PSPE     S    PTSY+FLT+ PCPSLVTVPA DLQARIKNSLP+VEFGDF  KQG +E 
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVEL

Query:  G-------DLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
        G       +  CTICL EMER E MREL NC HVFHRECLDTWIDEFQI CPVCRS L P G G GFRF R
Subjt:  G-------DLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.6e-5369.68Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG----
        MGFL+FA NGQR SQILH FT ILL+ KL+AAHFGL+ PSPE     S  +RPTSYV LTEG  PSLVTVPA DLQARIK SLP++E+GDFV KQG    
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG----

Query:  --TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRS
           V+  + +CTICLCEMER E+MREL+NCCHVFH +CLDTWIDEF+I CPVCRS
Subjt:  --TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRS

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]1.3e-5869.59Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVEL
        MGFLYF+ N   CSQILHFFT ILL+LKL+AAHF LL  SPE     S  DRPTS+VFLTEGPC SLVTVPA DLQ RIK SLP+V F DF+ KQG +E 
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVEL

Query:  GDLR-------CTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
        G+         CT+CLCEMER ESMREL NCCHVFHREC D WIDEFQI CPVCRSLL P G G GFRFF+
Subjt:  GDLR-------CTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

TrEMBL top hitse value%identityAlignment
A0A2G9G363 RING-type domain-containing protein2.2e-2439.75Show/hide
Query:  MGFLYFATNGQRCSQI---LHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGT
        MGFLY+A    +   I   L+ FT           H GL  P PE+    ++ D   +Y+ + +G  PSLV VP   +   IKN +P++++ DF+ +   
Subjt:  MGFLYFATNGQRCSQI---LHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGT

Query:  VE-----LGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFP
         E      G+  C+ICL  +E    +REL NC H+FHRECLDTWIDE Q+ CP+CRS+L P
Subjt:  VE-----LGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFP

A0A438DBU0 E3 ubiquitin-protein ligase RHA1B2.2e-2445.77Show/hide
Query:  ILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTS-YVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMER
        +L +F  I++   +  AH GL  P PEQ     + + P S YV + +G  PSLV VP   + A IK  +PVVE+G F+ + G  E  D  C++CL  ++R
Subjt:  ILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTS-YVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMER

Query:  LESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGL
           +REL+NCCHVFH+ECLDTW+DE Q+ CP+CRS+LFP  +
Subjt:  LESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGL

A0A6I9TKD6 RING-H2 finger protein ATL80-like7.5e-2540.88Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLI----AAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG
        MGFLY A    R   I+ FF  I    + +     A  GL  P PE+   P++ D   +Y+ + +G  PSLV +P   + A IK  +P V+F DF+R++ 
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLI----AAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG

Query:  TVELGDLR----CTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLL
          E  +L     C+ICL  +E  + +REL NC HVFH  CLDTW+DE Q+ CP+CRS+L
Subjt:  TVELGDLR----CTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLL

A0A6J1E009 RING-H2 finger protein ATL2-like4.6e-5966.29Show/hide
Query:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQP-PPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRK-----
        MGFLYFA NG RCSQILHFFTGI  RLK +  + G+L P P+QP      VDRPTSYVF+TEG CPSLVTVPATDLQARIK SLP+VEFGDF  K     
Subjt:  MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQP-PPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRK-----

Query:  -----QGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
             +   E    RCTICL +ME+ E MREL+NCCHVFH+ECLDTWIDEFQI CP+CRS+L P G GDG R+FR
Subjt:  -----QGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

A0A6J1K3P6 RING-H2 finger protein ATL46-like4.3e-5767.84Show/hide
Query:  MGFLYFATNGQRCSQILH-FFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG---
        MGFL+FA N Q  SQILH  FT ILL+ KL+AAHFGL+ PSPE     S  +RPTSYV LTEG  PSLVTVPA DLQ RIK SLP++E+GDFV KQG   
Subjt:  MGFLYFATNGQRCSQILH-FFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQG---

Query:  ---TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR
            V+  + +CTICLCEMER E+MREL NCCHVFHR+CLDTWIDEF+I CPVCRS+LFP G GDGF F R
Subjt:  ---TVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR

SwissProt top hitse value%identityAlignment
O64762 RING-H2 finger protein ATL382.9e-1035.14Show/hide
Query:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCR
        L   I NS P   + +   K+  + +G + C +C+CE E  E++R +  CCHVFH +C+  W+ +    CP+CR
Subjt:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCR

O64763 E3 ubiquitin-protein ligase ATL93.8e-1044.83Show/hide
Query:  GDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGD
        G + C +CLCE E  E++R +  CCHVFH +C+D W+ E    CP+CR+ L  +  GD
Subjt:  GDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGD

Q8H7N9 E3 ubiquitin-protein ligase Os03g01882001.1e-0935.06Show/hide
Query:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLL
        L   +  + P   +GD V+ +   + G L C +CL E    + +R L  CCHVFH +C+D W+    + CP+CR+ L
Subjt:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLL

Q9LY41 E3 ubiquitin-protein ligase ATL43.5e-1137.8Show/hide
Query:  PATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLF
        P T+ ++ + +SLP+ +F    R+  ++  GD  C +CL + E  + +R L  CCH FH +C+D W+   Q  CP+CRS LF
Subjt:  PATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLF

Q9XF92 Brassinosteroid-responsive RING protein 12.0e-1137.8Show/hide
Query:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGF
        I+  LPV++F +       +      C +CL E E  + +R L NC H+FHR CLD W+D  Q  CP+CR+   PD + + F
Subjt:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGF

Arabidopsis top hitse value%identityAlignment
AT1G63840.1 RING/U-box superfamily protein5.5e-1232.5Show/hide
Query:  PPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWI
        P S   P PP  + +P S   L                       LPVV F D  R +         C +CL + E  + +R L NC H+FHR CLD W+
Subjt:  PPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWI

Query:  DEF-QIACPVCRSLLFPDGL
          + Q+ CP+CR+   PD L
Subjt:  DEF-QIACPVCRSLLFPDGL

AT2G34990.1 RING/U-box superfamily protein2.1e-1135.14Show/hide
Query:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCR
        L   I NS P   + +   K+  + +G + C +C+CE E  E++R +  CCHVFH +C+  W+ +    CP+CR
Subjt:  LQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCR

AT3G43430.1 RING/U-box superfamily protein2.1e-1139.76Show/hide
Query:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWI--------DEFQIACPVCRSLLFP
        IK SL V  F D V ++    + D+ C +CL ++E  + +REL NC HVFHR+C+D W+        D+    CP+CR+ L P
Subjt:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWI--------DEFQIACPVCRSLLFP

AT3G60220.1 TOXICOS EN LEVADURA 42.5e-1237.8Show/hide
Query:  PATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLF
        P T+ ++ + +SLP+ +F    R+  ++  GD  C +CL + E  + +R L  CCH FH +C+D W+   Q  CP+CRS LF
Subjt:  PATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLF

AT3G61460.1 brassinosteroid-responsive RING-H21.4e-1237.8Show/hide
Query:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGF
        I+  LPV++F +       +      C +CL E E  + +R L NC H+FHR CLD W+D  Q  CP+CR+   PD + + F
Subjt:  IKNSLPVVEFGDFVRKQGTVELGDLRCTICLCEMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTCTCTATTTCGCCACTAACGGCCAAAGATGCTCACAGATCCTCCATTTCTTCACCGGAATCCTCCTCCGACTGAAGCTAATCGCCGCCCATTTCGGCCTCCT
CCCACCCTCGCCGGAGCAGCCGCCGCCGCCCTCCGCCGTCGACCGCCCGACCAGCTACGTCTTCTTGACGGAAGGCCCCTGCCCGTCGCTGGTCACCGTTCCGGCCACCG
ATCTGCAGGCGAGGATCAAGAACAGCCTTCCGGTCGTGGAGTTTGGGGATTTTGTTCGGAAACAGGGGACGGTGGAATTGGGGGATTTGAGATGCACGATCTGTTTGTGC
GAAATGGAGCGTTTGGAATCGATGAGAGAGCTCGCTAATTGCTGCCATGTGTTTCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTGCTTGCCCTGTTTG
TAGATCTCTGCTTTTTCCCGATGGTTTGGGCGATGGGTTTCGATTCTTTCGGTGA
mRNA sequenceShow/hide mRNA sequence
CGGCTTTATCCACTTTGCCGCTTTAAAAAAGCCCCAAACAAATCAGGGATTTCCTTCGTCTCTCTGAATCCACGAATGGGGTTTCTCTATTTCGCCACTAACGGCCAAAG
ATGCTCACAGATCCTCCATTTCTTCACCGGAATCCTCCTCCGACTGAAGCTAATCGCCGCCCATTTCGGCCTCCTCCCACCCTCGCCGGAGCAGCCGCCGCCGCCCTCCG
CCGTCGACCGCCCGACCAGCTACGTCTTCTTGACGGAAGGCCCCTGCCCGTCGCTGGTCACCGTTCCGGCCACCGATCTGCAGGCGAGGATCAAGAACAGCCTTCCGGTC
GTGGAGTTTGGGGATTTTGTTCGGAAACAGGGGACGGTGGAATTGGGGGATTTGAGATGCACGATCTGTTTGTGCGAAATGGAGCGTTTGGAATCGATGAGAGAGCTCGC
TAATTGCTGCCATGTGTTTCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTGCTTGCCCTGTTTGTAGATCTCTGCTTTTTCCCGATGGTTTGGGCGATG
GGTTTCGATTCTTTCGGTGACTGTTTGGTTGAGCCGCCGCCGCCGCCGCCGCTACTGCATGGACGGCGACAATTGTTTGTTTCGAAATGAATTTATGAGATATAAAAATT
GCATTATGAGAATTGGTATTTGTTTCTCGTCTCCCGTATATACTTCAAAAAAGAAAAAGAAACCAACTAGACACTATTTTTCTTTTTCATTTTTTAATAGATTTAGAACA
ATAAAATTATTCTAAAAT
Protein sequenceShow/hide protein sequence
MGFLYFATNGQRCSQILHFFTGILLRLKLIAAHFGLLPPSPEQPPPPSAVDRPTSYVFLTEGPCPSLVTVPATDLQARIKNSLPVVEFGDFVRKQGTVELGDLRCTICLC
EMERLESMRELANCCHVFHRECLDTWIDEFQIACPVCRSLLFPDGLGDGFRFFR