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Sed0004262 (gene) of Chayote v1 genome

Gene IDSed0004262
OrganismSechium edule (Chayote v1)
DescriptionNucleolar protein 10
Genome locationLG05:772862..783910
RNA-Seq ExpressionSed0004262
SyntenySed0004262
Gene Ontology termsGO:0031118 - rRNA pseudouridine synthesis (biological process)
GO:0031120 - snRNA pseudouridine synthesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031429 - box H/ACA snoRNP complex (cellular component)
GO:0090661 - box H/ACA telomerase RNP complex (cellular component)
GO:0034513 - box H/ACA snoRNA binding (molecular function)
GO:0070034 - telomerase RNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2898.44Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

PNX96303.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Trifolium pratense]9.9e-2893.75Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

XP_020250406.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis]1.3e-2796.88Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

XP_022931219.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata]1.5e-2898.44Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

XP_030543963.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea]7.6e-2896.88Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

TrEMBL top hitse value%identityAlignment
A0A1S3BHD2 Nucleolar protein 101.8e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ P PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

A0A2K3MZS9 Nucleolar protein 104.8e-2893.75Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

A0A2Z6MYL0 Nucleolar protein 104.8e-2893.75Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

A0A6J1EYV1 Nucleolar protein 107.4e-2998.44Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

A0A6J1KA21 Nucleolar protein 107.4e-2998.44Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

SwissProt top hitse value%identityAlignment
Q6DRH5 H/ACA ribonucleoprotein complex subunit 31.8e-1969.35Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP
        M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQ P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein2.4e-2481.25Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+   +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

Q9CQS2 H/ACA ribonucleoprotein complex subunit 34.3e-1864.52Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQ P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 34.3e-1864.52Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQ P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAP

Q9V5P6 H/ACA ribonucleoprotein complex subunit 33.3e-1867.19Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYL + IN+NGD+VYT KK +  G  T SAHPARFSP+DKYSRQR+ +KKRFGLL TQ P P Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein1.7e-2581.25Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+   +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein1.6e-2379.69Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
        MYLQ YIN+ G+KVYTT KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+   +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTCAGTTTTACATAAACGACAATGGCGACAAAGTTTACACCACAAAGAAAGAATCGCCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCC
TGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCCTGCTACCCACCCAGCATCCAGCTCCAAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATCTTCAGTTTTACATAAACGACAATGGCGACAAAGTTTACACCACAAAGAAAGAATCGCCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCC
TGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCCTGCTACCCACCCAGCATCCAGCTCCAAAGTACTGA
Protein sequenceShow/hide protein sequence
MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY