; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004304 (gene) of Chayote v1 genome

Gene IDSed0004304
OrganismSechium edule (Chayote v1)
DescriptionPaired amphipathic helix protein SIN3 4-like
Genome locationLG08:32338099..32339592
RNA-Seq ExpressionSed0004304
SyntenySed0004304
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0016575 - histone deacetylation (biological process)
GO:0000118 - histone deacetylase complex (cellular component)
GO:0000785 - chromatin (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51184.1 hypothetical protein Csa_008414 [Cucumis sativus]1.0e-2672.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

XP_011655296.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis sativus]1.0e-2672.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

XP_031741312.1 paired amphipathic helix protein Sin3-like 3 isoform X4 [Cucumis sativus]1.0e-2672.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

XP_038889114.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Benincasa hispida]1.0e-2672.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

XP_038889117.1 paired amphipathic helix protein Sin3-like 3 isoform X4 [Benincasa hispida]1.0e-2672.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

TrEMBL top hitse value%identityAlignment
A0A0A0KQL9 HDAC_interact domain-containing protein4.8e-2772.34Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

A0A1S3CPW0 paired amphipathic helix protein Sin3-like 4 isoform X17.0e-2670.21Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+ IF+D+KE YE FL+VMK+FKA RIDT GVI RVKQLFK H DLI GFN FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

A0A2K3NYG6 Paired amphipathic helix protein SIN3 4-like4.1e-2668.48Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        NDAL YL  VR++FQD KE Y+ FL+VMKDFKA RIDT GVIERVK+LFK H DLI GFN FLP+GYAITL  E  P   KK  +FEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

A0A6J1D942 paired amphipathic helix protein Sin3-like 4 isoform X18.2e-2771.28Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FK+ RIDT GVI RVKQLFK H DLI GFN+FLP+GYAIT  LE+ET P+KKK   QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAIT--LEEETIPEKKKKTNQFEESINF

A0A6J1KCL8 paired amphipathic helix protein Sin3-like 3 isoform X17.0e-2668.82Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLE-EETIPEKKKKTNQFEESINF
        NDAL+YL  V+DIF+DKKE YE FL+VMK+FKA RIDT GVI RVK LFK H DLI GFN FLP+G+AIT   E+ IP +KKK  QFEE+INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLE-EETIPEKKKKTNQFEESINF

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 44.1e-2359.14Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLE-EETIPEKKKKTNQFEESINF
        NDAL YL  V+D FQDK++ Y+ FL+VMKDFKA R+DT GVI RVK+LFK + +LI GFN FLP+G+ ITL  E+  P   KK  +FEE+I+F
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLE-EETIPEKKKKTNQFEESINF

O48686 Paired amphipathic helix protein Sin3-like 31.5e-2256.52Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        NDAL YL  V+D FQD++  Y+ FL+VMK+FK+ R+DT GVI RVK+LFK H +LI GFN FLP+G+ ITL+ E      KK  +FEE+I+F
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

Q9LFQ3 Paired amphipathic helix protein Sin3-like 22.8e-2457.61Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        +DAL YL +V+++FQD+++ Y++FL+VMKDFKA + DT GVI RVK+LFK H +LIFGFN FLP+G+ ITL++   P   KKT +FEE+I+F
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

Q9SRH9 Paired amphipathic helix protein Sin3-like 15.7e-2560.64Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF
        NDAL YL +V+++FQD++E Y+ FL+VMKDFKA R DT GVI RVK+LFK H +LI+GFN FLP+GY ITL  E++ +P   KKT +FE++INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF

Q9XIE1 Paired amphipathic helix protein Sin3-like 54.1e-2361.54Show/hide
Query:  DALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        DAL YL  V+D+FQD KE YE FL VMKDFKA R+DT GVI RVK LFK + DL+ GFN FLP+GY ITL+ E   EK KK   F+ +I F
Subjt:  DALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

Arabidopsis top hitse value%identityAlignment
AT1G59890.1 SIN3-like 52.9e-2461.54Show/hide
Query:  DALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        DAL YL  V+D+FQD KE YE FL VMKDFKA R+DT GVI RVK LFK + DL+ GFN FLP+GY ITL+ E   EK KK   F+ +I F
Subjt:  DALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

AT3G01320.1 SIN3-like 14.0e-2660.64Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF
        NDAL YL +V+++FQD++E Y+ FL+VMKDFKA R DT GVI RVK+LFK H +LI+GFN FLP+GY ITL  E++ +P   KKT +FE++INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF

AT3G01320.2 SIN3-like 14.0e-2660.64Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF
        NDAL YL +V+++FQD++E Y+ FL+VMKDFKA R DT GVI RVK+LFK H +LI+GFN FLP+GY ITL  E++ +P   KKT +FE++INF
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITL--EEETIPEKKKKTNQFEESINF

AT5G15020.1 SIN3-like 22.0e-2557.61Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        +DAL YL +V+++FQD+++ Y++FL+VMKDFKA + DT GVI RVK+LFK H +LIFGFN FLP+G+ ITL++   P   KKT +FEE+I+F
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF

AT5G15020.2 SIN3-like 22.0e-2557.61Show/hide
Query:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF
        +DAL YL +V+++FQD+++ Y++FL+VMKDFKA + DT GVI RVK+LFK H +LIFGFN FLP+G+ ITL++   P   KKT +FEE+I+F
Subjt:  NDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGATGCCCTACAATATCTTATGAAAGTTAGAGACATTTTTCAAGACAAGAAGGAAGATTATGAAGTTTTTCTTCAAGTAATGAAAGATTTCAAGGCTCTAAGAAT
TGATACTCCTGGTGTCATAGAAAGGGTAAAGCAGCTATTTAAAGATCACCCTGACCTGATTTTTGGCTTTAATGTGTTTTTGCCAAGAGGATATGCAATAACTCTTGAGG
AAGAAACAATTCCTGAAAAGAAGAAGAAGACTAATCAATTTGAGGAATCTATCAACTTTAAGGATGGCAAGTTGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACGATGCCCTACAATATCTTATGAAAGTTAGAGACATTTTTCAAGACAAGAAGGAAGATTATGAAGTTTTTCTTCAAGTAATGAAAGATTTCAAGGCTCTAAGAAT
TGATACTCCTGGTGTCATAGAAAGGGTAAAGCAGCTATTTAAAGATCACCCTGACCTGATTTTTGGCTTTAATGTGTTTTTGCCAAGAGGATATGCAATAACTCTTGAGG
AAGAAACAATTCCTGAAAAGAAGAAGAAGACTAATCAATTTGAGGAATCTATCAACTTTAAGGATGGCAAGTTGGAGTAG
Protein sequenceShow/hide protein sequence
MNDALQYLMKVRDIFQDKKEDYEVFLQVMKDFKALRIDTPGVIERVKQLFKDHPDLIFGFNVFLPRGYAITLEEETIPEKKKKTNQFEESINFKDGKLE