CuGenDBv2

Gene ID	Sed0004336
Organism	Sechium edule (Chayote v1)
Description	regulator of nonsense transcripts UPF3-like
Genome location	LG10:37705368..37714177
RNA-Seq Expression	Sed0004336
Synteny	Sed0004336
Gene Ontology terms	GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process) GO:0045727 - positive regulation of translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR005120 - UPF3 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily IPR039722 - Nonsense-mediated mRNA decay protein 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008459659.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]

6.3e-242

86.94

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSL HSDLF HIHDRFAGR+N SY+RPG TSQK QR ARAYIDFTRP+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SSTKKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  KE PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRGGAASSRKPES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDSVKN+NRRDKSNFILV RR+DQSA S GIGISDV  AD GKK+ILLLKGKERDISH+++ MLQLQSATSSGNSPASA+K N RR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        +IRSIL+NNEARHGQS+SVAQSH KIQILNSDNGKRPPR  NARSGSND+SSNEPNPSGSEGDGKR  ++KF+KKELHGLG+ASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPRSRSDA VSQL+E SVSQSSHL S+S+EAYRGEMK+DIHGSR+ DVTT + GR+SS+ENGSVRHVGRRG GHVMKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

XP_022948756.1 regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita moschata]

1.3e-242

87.33

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRFAGRYNS Y+RPG TSQK QR ARAYIDFT P+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SS+KKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  K+ PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRG AASSRK ES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDS KN+NRRDKSNFILV RREDQSATS GIGISDV  ADSGKK+ILLLKGK RD+SHIA+GMLQ QSATSSGNSPA+ATKQNQRR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NN+ARHGQS+SVAQSH KIQILNSDNGKRPPR IN+RSGSNDMSSN+PNPSGSEGDGKR  E+KFNKKE HGLGNASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPR RSDA VSQLDE SVSQS+HL S+S+EAYRGEMKDD+HGSR+GDVTTT+ GRSSS+ENGSVRHVGRRG  H+MKDDGSLNPNEGKP +RGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

XP_022973412.1 regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita maxima]

1.7e-242

87.52

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRFAGRYN  YFRPG TSQK QR ARAYIDFT P+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SS+KKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  K+ PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRG AASSRK ES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDS KN+NRRDKSNFILV RREDQSATS GIGISDV  ADSGKK+ILLLKGK RD+SHIA+GMLQ QSATSSGNSPA+ATKQNQRR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NN+ARHGQS+SVAQSH KIQILNSDNGKRPPR IN+RSGSNDMSSN+PNPSGSEGDGKR  E+KFNKKE HGLGNASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPR RSDA VSQLDE SVSQS+HL S+S+EAYRGEMKDD+HGSR+GDVTTT+ GRSSS+ENGSVRHVGRRG  H+MKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

XP_023523934.1 regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pepo]

1.5e-243

87.72

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRFAGRYNS Y+RPG TSQK QR ARAYIDFT P+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SS+KKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  K+ PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRG AASSRK ES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDS KN+NRRDKSNFILV RREDQSATS GIGISDV  ADSGKK+ILLLKGK RD+SHIA+GMLQ QSATSSGNSPA+ATKQNQRR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NN+ARHGQS+SVAQSH KIQILNSDNGKRPPRSIN+RSGSNDMSSN+PNPSGSEGDGKR  E+KFNKKE HGLGNASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPR RSDA VSQLDE SVSQS+HL S+S+EAYRGEMKDD+HGSR+GDVTTT+ GRSSS+ENGSVRHVGRRG  H+MKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

XP_038890175.1 regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida]

1.7e-242

86.74

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRF GR+N SY+RPG TSQK QR ARAYIDFTRP+DV EFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPE-SSMKR
        SSTKKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  KE PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRGGAASSRKPE +SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPE-SSMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDSVKN+NRRDKSNFILV RREDQSATS GIGISDV  AD GKK+ILLLKGKERDISH+++GMLQLQSATSS  SPASA+K NQRR+A GS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NNEARHGQ++SVAQSH KIQILNSDNGKRPPR INARSGSNDMSSNEPNPSGSEGDGKR  + KF+KKELHGLG+ +EKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPRSRSDA VSQL+E SVSQSSHL S+S+EAYRGEMK+D+HGSR+GDVTTT+ GR+SS+ENGSVRHVGRRG  HVMKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSY5 Smg4_UPF3 domain-containing protein

6.8e-242

86.74

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSL HSDLF HIHDRFAGR+N SY+RPG TSQK QR ARAYIDFTRP+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SSTKKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  KE PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRGGAASSRKPES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDSVKN+NRRDKSNFILV RREDQSATS  IGISDV  AD GKK+ILLLKGKERDISH+++ MLQLQSATSSGNSPASA+K N RR+AGG 
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        +IRSIL+NNEARHGQS+SVAQSH KIQILNSDNGKRPPR  NARSGSND+SSNEPNPSGSEGDGKR +++KF+KKELHGLG+ASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPRSRSDA VSQL+E SV QSSHL S+S+EA+RGEMK+DIHGSR+GDVTT + GR+SS+ENGSVRHVGRRG GHVMKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

A0A1S3CB69 regulator of nonsense transcripts UPF3 isoform X1

3.0e-242

86.94

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSL HSDLF HIHDRFAGR+N SY+RPG TSQK QR ARAYIDFTRP+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SSTKKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  KE PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRGGAASSRKPES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDSVKN+NRRDKSNFILV RR+DQSA S GIGISDV  AD GKK+ILLLKGKERDISH+++ MLQLQSATSSGNSPASA+K N RR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        +IRSIL+NNEARHGQS+SVAQSH KIQILNSDNGKRPPR  NARSGSND+SSNEPNPSGSEGDGKR  ++KF+KKELHGLG+ASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPRSRSDA VSQL+E SVSQSSHL S+S+EAYRGEMK+DIHGSR+ DVTT + GR+SS+ENGSVRHVGRRG GHVMKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

A0A6J1D8M3 regulator of nonsense transcripts UPF3 isoform X1

4.1e-239

85.77

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HI DRFAGRYN  Y+RPG TSQK QR +RAYIDFTRP+DV EFAEFFDGHVFVNEKG QYKAV+EYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SSTKKDGR+GTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  KE PIVTPLMEFVRQ+RAVESGTQGS+V RKVKRGG ASSRKPES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDSVKN+NRRDKSNFILV RR+DQ ATS GIGISDV  ADSGKK+ILLLKGKERDISH+A+GML LQSA+SSGNSP +ATKQNQRR+A GS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        +IRSIL+NNE RHGQ +SV+QSH KIQILNSDNGKRPPR INARSGSNDMS+NEPNPSGSEGDGKR  ESKF+KKELHGLG+ASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPRSRSDA VSQLDE S+SQSSHL S+S+EA+R EMKDDIHGSR+GDVTTT+ GR SS+ENGSVRHVGRRG GHVMKDDGSLNPNEGK  KRG+AGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

A0A6J1GA31 regulator of nonsense transcripts UPF3-like isoform X1

6.1e-243

87.33

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRFAGRYNS Y+RPG TSQK QR ARAYIDFT P+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SS+KKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  K+ PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRG AASSRK ES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDS KN+NRRDKSNFILV RREDQSATS GIGISDV  ADSGKK+ILLLKGK RD+SHIA+GMLQ QSATSSGNSPA+ATKQNQRR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NN+ARHGQS+SVAQSH KIQILNSDNGKRPPR IN+RSGSNDMSSN+PNPSGSEGDGKR  E+KFNKKE HGLGNASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPR RSDA VSQLDE SVSQS+HL S+S+EAYRGEMKDD+HGSR+GDVTTT+ GRSSS+ENGSVRHVGRRG  H+MKDDGSLNPNEGKP +RGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

A0A6J1I7G4 regulator of nonsense transcripts UPF3-like isoform X1

8.0e-243

87.52

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIR LPPSLPHSDLF HIHDRFAGRYN  YFRPG TSQK QR ARAYIDFT P+DV EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR
        SS+KKDGREGTIYKDPDYLEFLK IAKP EHLPSAEIQLERKEAEQ G  K+ PIVTPLMEFVRQ+RAVESGTQGS+VPRKVKRG AASSRK ES SMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPES-SMKR

Query:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        GMEKKKYILKDS KN+NRRDKSNFILV RREDQSATS GIGISDV  ADSGKK+ILLLKGK RD+SHIA+GMLQ QSATSSGNSPA+ATKQNQRR+AGGS
Subjt:  GMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDV--ADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
        MIRSIL+NN+ARHGQS+SVAQSH KIQILNSDNGKRPPR IN+RSGSNDMSSN+PNPSGSEGDGKR  E+KFNKKE HGLGNASEKQEKRIRNKDRPDRG
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY
        VWAPR RSDA VSQLDE SVSQS+HL S+S+EAYRGEMKDD+HGSR+GDVTTT+ GRSSS+ENGSVRHVGRRG  H+MKDDGSLNPNEGKP KRGVAGG+
Subjt:  VWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGY

Query:  EKQVWVQKSSSGS
        EKQVWVQKSSSGS
Subjt:  EKQVWVQKSSSGS

SwissProt top hits

e value

%identity

Alignment

B0S733 Regulator of nonsense transcripts 3A

1.6e-14

25.74

Show/hide

Query:  TKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD
        +KVVIRRLPPSL    L  H+       ++   F P + S      +RAYI+F  P+D++ F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD
Subjt:  TKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD

Query:  GREGTIYKDPDYLEFL--------KFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMK
         + GTI +DP+Y  FL        K +A P   L   E +     A++          TPL+E+++ ++ +E          + +R      R+ E   +
Subjt:  GREGTIYKDPDYLEFL--------KFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMK

Query:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGK-ERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        +  E+++   K++ K     +K   I + ++ D+        + D  DSG+      K + E+   H          +  S ++ +      ++R+  G 
Subjt:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGK-ERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG
          R    + + R        Q HH       D   R         G     + +    G     + G   K  K++   +G+  E    RIRNKDRP   
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRG

Query:  VWAPRSRS
        ++ P +R+
Subjt:  VWAPRSRS

Q10267 Nonsense-mediated mRNA decay protein 3

1.3e-08

23.57

Show/hide

Query:  KVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTS--QKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
        KV++  LPP+LP   +FL   + F        F  G  +   + +  + AY+ F     V EF   + GH F+++K   Y+A+V  AP Q++P S  K D
Subjt:  KVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTS--QKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD

Query:  GREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRR--AVESGTQGSTVPRKVKRGGAASSRKPESSMKRGMEKK
          EG++ +DP + EF K   +      S +  +E+ +             TPL++++ +++   VE G                   KP     +  +K 
Subjt:  GREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRR--AVESGTQGSTVPRKVKRGGAASSRKPESSMKRGMEKK

Query:  KYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGSMIRS
        +   K +  NS     S     S +    + +  I    V+D  K +    K K+  +S+         S  S  +  AS  K  +++ +G   I S
Subjt:  KYILKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGSMIRS

Q9BZI7 Regulator of nonsense transcripts 3B

1.9e-15

27.02

Show/hide

Query:  TKVVIRRLPPSLPHSDLFLHI-----HDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIRRLPP+L    L  H+     HD F        F   +TS      ARAYI+F   +D++ F + FDG+VF++ KG +Y A+VE+AP Q+  +  
Subjt:  TKVVIRRLPPSLPHSDLFLHI-----HDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  TKK-DGREGTIYKDPDYLEFLKFIAKPVEHLPSA-EIQLERKEAE--QYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMK
        TKK D + GTI  DP+Y +FL+  A   E + S  E  LE  EA+  +    K  P+++ L    R R       +   + RK +R       K E   K
Subjt:  TKK-DGREGTIYKDPDYLEFLKFIAKPVEHLPSA-EIQLERKEAE--QYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMK

Query:  R-GMEKKKYI----LKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRD
        R  +EK K I     +D +K+  +     F+L +  +         G  D  +  K+     K K+ D  ++++     QS T    S +    +  +R 
Subjt:  R-GMEKKKYI----LKDSVKNSNRRDKSNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRD

Query:  AGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEK-----RI
           S  R               + +   +++    +  ++  R    ++        +      E D  R    K    E  G    +EK+E+     RI
Subjt:  AGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEK-----RI

Query:  RNKDRPDRGVWAPRSRSDAPVSQLDEFSVSQSS
        RNKDRP   ++ P +RS   +   D+ + S  S
Subjt:  RNKDRPDRGVWAPRSRSDAPVSQLDEFSVSQSS

Q9FVW4 Regulator of nonsense transcripts UPF3

7.0e-103

45.49

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+R LPPSL  SDL   I  RFA RYN   FRPG +S K Q+ +RAY+ F  P+DV EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SSMK
         S KKD REG+I KDPDYLEFLK IA+PVE+LPSAEIQLER+EAEQ G  K  PIVTPLMEF+RQ+RA   G QG S + R  +R    S+ KP     K
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SSMK

Query:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPA
        R  EKKKY+ K+S KN  R+  ++         QS +SG                 GI+   DSGKK+ILLL+ K+RD         +    T+   + +
Subjt:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPA

Query:  SATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEK
        + ++QNQ+ D GG +I+ IL+ N++R  QS++  QS  +++   ++N KRP R  N R+G                            K+ H  G  SEK
Subjt:  SATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEK

Query:  QEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSL
        QE+R RNKDRPDR +WAPR     D P+S                      GE+KD +   RSG+V  + GG   +LENGS RH  RR GG   K++  +
Subjt:  QEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSL

Query:  NPNEGKPPKRGVAGG---YEKQVWVQKSSSGS
           EGK  +RG  GG   +EKQ+W+QK SSG+
Subjt:  NPNEGKPPKRGVAGG---YEKQVWVQKSSSGS

Q9H1J1 Regulator of nonsense transcripts 3A

6.3e-11

25.91

Show/hide

Query:  TKVVIRRLPPSLPHSDLF-----LHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIRRLPP L    L      L  HD F        F   + S      +RAYI+F  PDD+L F + FDG++F++ KG +Y AVVE+AP Q++ +  
Subjt:  TKVVIRRLPPSLPHSDLF-----LHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  -TKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMKRGM
          KKD + G+I  DP+Y +FL+      E   SA  +    E E           TPL+E+++ R+ +E          + +R      R  E   +R  
Subjt:  -TKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMKRGM

Query:  EKKKYILKDSVKNSNRRDKSNFILVSRR----EDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS
        E+++   K++ K     +K   I + ++    E+ +         ++   G K+     G       +   + + Q  + SG+      +  +R     S
Subjt:  EKKKYILKDSVKNSNRRDKSNFILVSRR----EDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGS

Query:  MIRSILVNNEARHGQSTSVAQSHHKIQILN--SDNGKR---PPRSINARSGSNDMSSNEPNPSGSE-GDGKRGTESKFNKKELHGLGNASEKQEKRIRNK
          +   V++  RH       ++HH+ + L+  S++ +R    P     + GS D  S  P  +    G  +R  +S   +KE             R+ NK
Subjt:  MIRSILVNNEARHGQSTSVAQSHHKIQILN--SDNGKR---PPRSINARSGSNDMSSNEPNPSGSE-GDGKRGTESKFNKKELHGLGNASEKQEKRIRNK

Query:  DRPDRGVWAPRSR
        DRP   ++ P +R
Subjt:  DRPDRGVWAPRSR

Arabidopsis top hits

e value

%identity

Alignment

AT1G33980.1 Smg-4/UPF3 family protein

5.0e-104

45.49

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+R LPPSL  SDL   I  RFA RYN   FRPG +S K Q+ +RAY+ F  P+DV EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SSMK
         S KKD REG+I KDPDYLEFLK IA+PVE+LPSAEIQLER+EAEQ G  K  PIVTPLMEF+RQ+RA   G QG S + R  +R    S+ KP     K
Subjt:  SSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SSMK

Query:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPA
        R  EKKKY+ K+S KN  R+  ++         QS +SG                 GI+   DSGKK+ILLL+ K+RD         +    T+   + +
Subjt:  RGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPA

Query:  SATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEK
        + ++QNQ+ D GG +I+ IL+ N++R  QS++  QS  +++   ++N KRP R  N R+G                            K+ H  G  SEK
Subjt:  SATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEK

Query:  QEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSL
        QE+R RNKDRPDR +WAPR     D P+S                      GE+KD +   RSG+V  + GG   +LENGS RH  RR GG   K++  +
Subjt:  QEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSL

Query:  NPNEGKPPKRGVAGG---YEKQVWVQKSSSGS
           EGK  +RG  GG   +EKQ+W+QK SSG+
Subjt:  NPNEGKPPKRGVAGG---YEKQVWVQKSSSGS

AT1G33980.2 Smg-4/UPF3 family protein

4.7e-102

45.13

Show/hide

Query:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNT--SQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV
        MK+PL++ KVV+R LPPSL  SDL   I  RFA RYN   FRPG +    K Q+ +RAY+ F  P+DV EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRV
Subjt:  MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNT--SQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV

Query:  PRSSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SS
        P+ S KKD REG+I KDPDYLEFLK IA+PVE+LPSAEIQLER+EAEQ G  K  PIVTPLMEF+RQ+RA   G QG S + R  +R    S+ KP    
Subjt:  PRSSTKKDGREGTIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQG-STVPRKVKRGGAASSRKPE-SS

Query:  MKRGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNS
         KR  EKKKY+ K+S KN  R+  ++         QS +SG                 GI+   DSGKK+ILLL+ K+RD         +    T+   +
Subjt:  MKRGMEKKKYILKDSVKNSNRRDKSNFILVSRREDQSATSG---------------GIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNS

Query:  PASATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNAS
         ++ ++QNQ+ D GG +I+ IL+ N++R  QS++  QS  +++   ++N KRP R  N R+G                            K+ H  G  S
Subjt:  PASATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDNGKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNAS

Query:  EKQEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDG
        EKQE+R RNKDRPDR +WAPR     D P+S                      GE+KD +   RSG+V  + GG   +LENGS RH  RR GG   K++ 
Subjt:  EKQEKRIRNKDRPDRGVWAPR--SRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIHGSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDG

Query:  SLNPNEGKPPKRGVAGG---YEKQVWVQKSSSGS
         +   EGK  +RG  GG   +EKQ+W+QK SSG+
Subjt:  SLNPNEGKPPKRGVAGG---YEKQVWVQKSSSGS

Sequences

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CDS sequence

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ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCGGTTGCCCCCTTCTCTCCCTCACTCCGATCTCTTCCTCCATATTCACGATCGATTCGCCGGCCGCTACAA
TTCCTCTTACTTTCGTCCCGGAAACACCAGTCAGAAGGGCCAGAGGAACGCTCGGGCCTACATAGATTTTACCAGACCTGATGATGTTCTTGAGTTTGCGGAGTTCTTTG
ACGGCCATGTTTTTGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCGTCTACCAAGAAAGATGGTCGTGAGGGG
ACTATATACAAAGATCCAGATTATTTGGAGTTTCTCAAATTCATTGCAAAGCCTGTTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATA
TGGTGGTGGAAAGGAACCTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGTCAGAGACGAGCAGTTGAAAGTGGAACTCAGGGATCTACAGTACCTCGGAAGGTTAAAA
GAGGCGGAGCAGCATCCTCTAGAAAGCCCGAGTCTTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGTGAAGAACTCAAACCGTAGAGACAAG
TCAAATTTCATTTTGGTGTCCAGGCGAGAGGATCAGTCAGCCACGTCAGGTGGAATTGGAATTTCTGATGTCGCTGACTCTGGAAAGAAAAGAATTCTGCTTCTCAAGGG
GAAAGAGCGAGATATATCACATATTGCTAATGGAATGTTACAGTTGCAGAGTGCAACATCTTCTGGGAATTCTCCTGCTAGTGCTACAAAACAGAATCAGAGGCGTGATG
CTGGTGGAAGCATGATCAGAAGCATTCTTGTAAATAATGAAGCTCGTCATGGACAGAGTACATCAGTAGCCCAGTCTCATCACAAAATTCAGATCCTAAACTCAGACAAT
GGGAAGCGACCTCCTCGTTCCATTAATGCTCGATCTGGGTCTAACGACATGTCCAGCAACGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTACAGAAAG
TAAGTTTAATAAAAAGGAACTTCATGGCCTAGGTAATGCTAGTGAGAAGCAAGAAAAGCGAATAAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCTCCACGTAGTC
GTTCAGATGCACCAGTCTCACAACTTGATGAATTCTCTGTTTCACAATCTAGTCATTTGCCTTCGAACTCGATTGAAGCATACCGTGGGGAAATGAAAGATGATATTCAT
GGAAGCAGGAGTGGGGATGTTACAACCACTATGGGTGGTCGTAGCAGTTCATTGGAGAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGGTGGCCATGTTATGAAGGA
TGATGGCTCTTTGAACCCGAATGAAGGGAAGCCACCAAAAAGAGGTGTTGCTGGTGGATATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAA

mRNA sequence

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CAAATTTCCAACTTGTGCAAAAACAAATTTCTTCTTCTTCTTCGTCTTCTTCGTCTTCTTCTTCGTCTTCGTCTTCTTCTTTCTAATTCCTTGTTTGTTTGTTTTGCTGA
AAAAATTGTTGAGAAATTAGGAACAAAAACGCAGAAATAAAGTGTGTTTGGGCAGTGAAGGGGTTTTTTCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAG
GCGGTTGCCCCCTTCTCTCCCTCACTCCGATCTCTTCCTCCATATTCACGATCGATTCGCCGGCCGCTACAATTCCTCTTACTTTCGTCCCGGAAACACCAGTCAGAAGG
GCCAGAGGAACGCTCGGGCCTACATAGATTTTACCAGACCTGATGATGTTCTTGAGTTTGCGGAGTTCTTTGACGGCCATGTTTTTGTTAATGAGAAGGGTGCTCAGTAT
AAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCGTCTACCAAGAAAGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTCTCAA
ATTCATTGCAAAGCCTGTTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATATGGTGGTGGAAAGGAACCTCCAATTGTTACCCCTCTCA
TGGAGTTTGTTCGTCAGAGACGAGCAGTTGAAAGTGGAACTCAGGGATCTACAGTACCTCGGAAGGTTAAAAGAGGCGGAGCAGCATCCTCTAGAAAGCCCGAGTCTTCC
ATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGTGAAGAACTCAAACCGTAGAGACAAGTCAAATTTCATTTTGGTGTCCAGGCGAGAGGATCAGTC
AGCCACGTCAGGTGGAATTGGAATTTCTGATGTCGCTGACTCTGGAAAGAAAAGAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCACATATTGCTAATGGAATGT
TACAGTTGCAGAGTGCAACATCTTCTGGGAATTCTCCTGCTAGTGCTACAAAACAGAATCAGAGGCGTGATGCTGGTGGAAGCATGATCAGAAGCATTCTTGTAAATAAT
GAAGCTCGTCATGGACAGAGTACATCAGTAGCCCAGTCTCATCACAAAATTCAGATCCTAAACTCAGACAATGGGAAGCGACCTCCTCGTTCCATTAATGCTCGATCTGG
GTCTAACGACATGTCCAGCAACGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTACAGAAAGTAAGTTTAATAAAAAGGAACTTCATGGCCTAGGTAATG
CTAGTGAGAAGCAAGAAAAGCGAATAAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCTCCACGTAGTCGTTCAGATGCACCAGTCTCACAACTTGATGAATTCTCT
GTTTCACAATCTAGTCATTTGCCTTCGAACTCGATTGAAGCATACCGTGGGGAAATGAAAGATGATATTCATGGAAGCAGGAGTGGGGATGTTACAACCACTATGGGTGG
TCGTAGCAGTTCATTGGAGAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGGTGGCCATGTTATGAAGGATGATGGCTCTTTGAACCCGAATGAAGGGAAGCCACCAA
AAAGAGGTGTTGCTGGTGGATATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAACATATTTAAATCATAAAATGGCATCCAGACAGGACTATGACTCCT
CAAACTTCCAGGGGGAATATCTTCATTCTGAGGACTTTAATGCACATCCTCAGAAGGCATTATCATGTAAAATGGAGACATGCCCTGGAAGCAGTTGGTAACAGTAGTAG
GTTTTGTGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTAACAAAACACAAAGTTCTCTGGATTGAAGGCAAAATATGCATGCGTTCTATGGATAT
TTGGTTTAACAAAATCGAAGTTTCTTTGGTTGAAGACCAAGTATGGTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTGCCCAACATACCAAGTGGCAACTGATTCAC
ATCGAGGAACGTGCCGGTATATACATACGTGGTGGCTCGGGTGACAGGAGATCAAAACCAAGAGGGGAGGTTCCAACTTTCCCTTTGCTTGATGTTTTGGTCATATGCCA
AGTGTTGTTTTTGTTTTCCTTAGGAGCTGAATGTAGGAAGTACTTAGTAGTGTACTCTTTACTTACCATATTCTCACTGGGGGTGGTTGGTTTGGTACACAATTTGTACT
TCGAATTCATGCGTGGGGCAGTGAATCAGAAACATCAAAGTTATACTTTTTCATGTCTTACATCAGAAAAATGTGGTGATGGATTTATGGTACGTGTTTCTGTCAACTAA
TATATAACAGCTTTATTTTTCTGGTGTTATTAAAGTGGGTCAACTATAATTGCAAATTA

Protein sequence

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MKDPLERTKVVIRRLPPSLPHSDLFLHIHDRFAGRYNSSYFRPGNTSQKGQRNARAYIDFTRPDDVLEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREG
TIYKDPDYLEFLKFIAKPVEHLPSAEIQLERKEAEQYGGGKEPPIVTPLMEFVRQRRAVESGTQGSTVPRKVKRGGAASSRKPESSMKRGMEKKKYILKDSVKNSNRRDK
SNFILVSRREDQSATSGGIGISDVADSGKKRILLLKGKERDISHIANGMLQLQSATSSGNSPASATKQNQRRDAGGSMIRSILVNNEARHGQSTSVAQSHHKIQILNSDN
GKRPPRSINARSGSNDMSSNEPNPSGSEGDGKRGTESKFNKKELHGLGNASEKQEKRIRNKDRPDRGVWAPRSRSDAPVSQLDEFSVSQSSHLPSNSIEAYRGEMKDDIH
GSRSGDVTTTMGGRSSSLENGSVRHVGRRGGGHVMKDDGSLNPNEGKPPKRGVAGGYEKQVWVQKSSSGS

Sed0004336 (gene) of Chayote v1 genome