; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004343 (gene) of Chayote v1 genome

Gene IDSed0004343
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG07:4142907..4143452
RNA-Seq ExpressionSed0004343
SyntenySed0004343
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]7.2e-4569.81Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP
        MAN I IFLTFFL +LPKFS+LS+A+AVAKDQVGCS CS+C+NPCQ PPPP PPP               PPPPLPTSQCPPPP PPSC  CV  SPPPP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP

Query:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII
            PY P+DGGQFPGIAPPPPNPILPY+PYYYYSPPSAS  +V FSWK+  L  LIII
Subjt:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII

XP_022960417.1 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like [Cucurbita moschata]4.0e-4373.47Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP
        MANL+SI  TF L    KFS LS+ATAVAKDQVGCS CSSC+NPCQ PPPP PPPP    PTSQCPPPPPPPSC TC+  SP PP    PY P DG QFP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP

Query:  GIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        G+A PPPPNPILPYYPYYYYSPP+ASG  V  SWKI  LGLLIIICL
Subjt:  GIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

XP_023004682.1 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like [Cucurbita maxima]1.0e-4373.15Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQC--PPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQ
        MANL+SI+ TF L  L KFS LS+ATAVAKDQVGCS CSSC+NPCQ PPPP PP      PTSQC  PPPPPPPSC TCV  SP PP    PY P DGGQ
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQC--PPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQ

Query:  FPGIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        FPG+A PPPPNPILPYYPYYYYSPP+ASG +V  SWKI  LGLLIIICL
Subjt:  FPGIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.1e-4573.29Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP
        M NL+SI+ TF L  L KFS LS+ATAVAKDQVGCS CSSC+NPCQ PPPP PP      PTSQCPPPPPPPSC TC+  SP PP    PY P DGGQFP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP

Query:  GIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        G+APPPPNPILPYYPYYYYSPP+ASG +V  SWKI  LGLLIIICL
Subjt:  GIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]2.7e-3966.88Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQ-----------QPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYP
        MA+L SIFLT FLI+L KFS LS+AT  A+DQVGCS CSSC+NPCQ            PPPP PP PPPPLPT +CPPPP PPSC  CV  SPPPP    
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQ-----------QPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYP

Query:  PYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        PYTPTDGGQ+PG+APPPPNPILPY+PYYYY+PPS SG +V FSWK   L LL I+ L
Subjt:  PYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein1.0e-4469.81Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP
        MANLISIFLTFFL++L KFS+LS+ATAVAKDQVGCS CS+C+NPCQ PPPP PPP               PPPPLPTSQCPPPP PPSC  CV  SPPPP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP

Query:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII
            PY P+ GGQFPGIAPPPPNPILPY+PYYYYSPPSAS  +V FSWK   L  LII+
Subjt:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII

A0A5D3D2P5 Extensin-23.5e-4569.81Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP
        MAN I IFLTFFL +LPKFS+LS+A+AVAKDQVGCS CS+C+NPCQ PPPP PPP               PPPPLPTSQCPPPP PPSC  CV  SPPPP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPP---------------PPPPLPTSQCPPPPPPPSCQTCVSSSPPPP

Query:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII
            PY P+DGGQFPGIAPPPPNPILPY+PYYYYSPPSAS  +V FSWK+  L  LIII
Subjt:  LPYPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIII

A0A6J1H7D0 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like1.9e-4373.47Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP
        MANL+SI  TF L    KFS LS+ATAVAKDQVGCS CSSC+NPCQ PPPP PPPP    PTSQCPPPPPPPSC TC+  SP PP    PY P DG QFP
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFP

Query:  GIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        G+A PPPPNPILPYYPYYYYSPP+ASG  V  SWKI  LGLLIIICL
Subjt:  GIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 31.1e-3864.78Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPP-------------PPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLP
        MA+L SIFLT FL +L KFS LS AT  A+DQVGCS CSSC+NPCQ PPPP PP             PPPPPLP  +CPPPP PPSC  CV  SPPPP  
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPP-------------PPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLP

Query:  YPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
          PYTPTDGGQ+PG+APPPPNPILPY+PYYYY+PPS SG +V FSWK   L LL ++ L
Subjt:  YPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like5.0e-4473.15Show/hide
Query:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQC--PPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQ
        MANL+SI+ TF L  L KFS LS+ATAVAKDQVGCS CSSC+NPCQ PPPP PP      PTSQC  PPPPPPPSC TCV  SP PP    PY P DGGQ
Subjt:  MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQC--PPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQ

Query:  FPGIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL
        FPG+A PPPPNPILPYYPYYYYSPP+ASG +V  SWKI  LGLLIIICL
Subjt:  FPGIA-PPPPNPILPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICL

SwissProt top hitse value%identityAlignment
Q7G6K7 Formin-like protein 36.4e-0444.44Show/hide
Query:  SCENPCQQPPPPSPPPPPPPLP-----TSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFPG-----------IAPPPPNPILPYYPYYYYSPPS
        S   P   PPPP PPPPPPPLP     +SQ PPPPPPP    C+  SPPPP P PP  P      P            + PPPP P  P  P     PP 
Subjt:  SCENPCQQPPPPSPPPPPPPLP-----TSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFPG-----------IAPPPPNPILPYYPYYYYSPPS

Query:  ASGIAVGF
        A GI   F
Subjt:  ASGIAVGF

Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein3.7e-0741.54Show/hide
Query:  LTFFLIALPKFSILSTATAVAKDQ-VGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVS--SSPPPP-----LPYPPYTPTD--GGQ
        L+  LI L    +L T    +KD+ V C+ CSSC+NPC             P+P+S  PPPPPP S     S   SPPPP     + YPP    D  GG 
Subjt:  LTFFLIALPKFSILSTATAVAKDQ-VGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVS--SSPPPP-----LPYPPYTPTD--GGQ

Query:  FPGI------APPPPNPILPYYPYYYYSPP
        +P         PPPPNPI+PY+P+YY++PP
Subjt:  FPGI------APPPPNPILPYYPYYYYSPP

AT4G16140.1 proline-rich family protein5.2e-0940.91Show/hide
Query:  FLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQ----QPPPPSPPPPPPPLP-TSQCPPPPP----------PPSCQTCVSSSPPPPLP-----
        F TF L     F   +T          C+ C+SC+NPCQ     PPPPS P PPPP P T+ CPPPP           PP+ Q+   S  PPP       
Subjt:  FLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQ----QPPPPSPPPPPPPLP-TSQCPPPPP----------PPSCQTCVSSSPPPPLP-----

Query:  -YPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPP-----SASGIAVGFSWKI
         YPP  P  GG +P    PPPNPI+PY+P+YYY+PP     S S   + FS+ +
Subjt:  -YPPYTPTDGGQFPGIAPPPPNPILPYYPYYYYSPP-----SASGIAVGFSWKI

AT5G49280.1 hydroxyproline-rich glycoprotein family protein1.3e-1247.54Show/hide
Query:  TATAVAKDQ-VGCSTCSSCENPCQ--QPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPP------LPYPP----------YTPTDGGQFPGIAP
        T T  +KD+ V C+ CSSC+NPC   Q  PP P PPPP  PT+ CPPPP PPS     S   PPP        YPP          Y P   G +P   P
Subjt:  TATAVAKDQ-VGCSTCSSCENPCQ--QPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPP------LPYPP----------YTPTDGGQFPGIAP

Query:  PPPNPILPYYPYYYYSPPSASG
        PPPNPI+PY+P+YY++PP  SG
Subjt:  PPPNPILPYYPYYYYSPPSASG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATCTCATCTCCATTTTTCTCACTTTCTTCCTCATTGCACTTCCCAAATTTTCCATTCTCTCAACGGCCACCGCCGTGGCCAAGGATCAAGTCGGCTGTTCCAC
GTGTTCAAGTTGTGAAAACCCCTGCCAACAACCTCCTCCGCCGTCACCTCCGCCGCCACCTCCGCCGCTTCCCACTTCCCAATGCCCCCCTCCTCCGCCTCCCCCCTCCT
GCCAAACATGCGTCTCCTCTTCTCCTCCACCGCCGCTGCCGTACCCTCCGTACACGCCGACCGACGGCGGCCAATTTCCCGGCATAGCCCCACCGCCGCCGAACCCAATT
TTACCGTATTACCCTTACTATTATTACAGCCCCCCCTCTGCTTCTGGCATTGCCGTTGGATTTTCATGGAAAATTTGGGATTTGGGTTTGTTGATCATTATTTGCCTGAA
TTACCTCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATTCACATCAATGGCGAATCTCATCTCCATTTTTCTCACTTTCTTCCTCATTGCACTTCCCAAATTTTCCATTCTCTCAACGGCCACCGCCGTGGCCAAGGATCAAGTCG
GCTGTTCCACGTGTTCAAGTTGTGAAAACCCCTGCCAACAACCTCCTCCGCCGTCACCTCCGCCGCCACCTCCGCCGCTTCCCACTTCCCAATGCCCCCCTCCTCCGCCT
CCCCCCTCCTGCCAAACATGCGTCTCCTCTTCTCCTCCACCGCCGCTGCCGTACCCTCCGTACACGCCGACCGACGGCGGCCAATTTCCCGGCATAGCCCCACCGCCGCC
GAACCCAATTTTACCGTATTACCCTTACTATTATTACAGCCCCCCCTCTGCTTCTGGCATTGCCGTTGGATTTTCATGGAAAATTTGGGATTTGGGTTTGTTGATCATTA
TTTGCCTGAATTACCTCCATTAATTTTTCTGCCATTGAAGAACAGGGGAGAGATTACGAAGAGCGAAGATCAGAAGACGGGTAGTGTAATTGGATTATGAATTTAT
Protein sequenceShow/hide protein sequence
MANLISIFLTFFLIALPKFSILSTATAVAKDQVGCSTCSSCENPCQQPPPPSPPPPPPPLPTSQCPPPPPPPSCQTCVSSSPPPPLPYPPYTPTDGGQFPGIAPPPPNPI
LPYYPYYYYSPPSASGIAVGFSWKIWDLGLLIIICLNYLH