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Sed0004373 (gene) of Chayote v1 genome

Gene IDSed0004373
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG09:32765294..32765566
RNA-Seq ExpressionSed0004373
SyntenySed0004373
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046844.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-1451.81Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL ++CP +S  N T+ V EAY+RW + NEK+R Y++A+ S VLAKK ES+ TA E+M+ L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

XP_038882242.1 uncharacterized protein LOC120073466 [Benincasa hispida]2.3e-1457.33Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLS
        +DD KFVLTKECP + T N  + V +AYDRW ++NEK+R+YI+AN S+VLAKK ES+ T+ E+M  L G+ GQ S
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLS

XP_038882371.1 uncharacterized protein LOC120073638 [Benincasa hispida]1.0e-1450.6Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +F+LT+ECPP+ + N+ Q V EA+DRW R N+K+R YI+A+ SNVL KK E + TA E+M  L G+ GQ S   +HD +
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

XP_038885939.1 uncharacterized protein LOC120076247 [Benincasa hispida]1.4e-1449.4Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD ++VLT++CPP+ + N  +NV +AYDRW + NEK+  YI+AN SNVLAKK ES+ T  E+M  LHG+ GQ     + D +
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

XP_038890303.1 uncharacterized protein LOC120079919 [Benincasa hispida]1.8e-1453.01Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        MDD +F+LTKECPP+    T +NV + YDRW R NEK+R YI+AN SNVL KK E + TALE+M  L  I  +L S  +H+ +
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

TrEMBL top hitse value%identityAlignment
A0A5A7ULH1 Gag/pol protein1.5e-1453.01Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL +ECP +   N T+ V E Y+RW + NEK+R YI+A+ S VLAKK ES+ TA E+MN L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

A0A5A7V4M1 Gag/pol protein1.5e-1453.01Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL KECP +   N T+ V E Y+RW + NEK+R YI+A+ S VLAKK ES+ TA E+M+ L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

A0A5A7V6N0 Gag/pol protein1.5e-1453.01Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL +ECP +   N TQ V E Y+RW + NEK+R YI+A+ S VLAKK ES+ TA E+M+ L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

A0A5A7VH46 Gag/pol protein2.5e-1451.81Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL +ECP +   N T+ V E Y+RW + NEK+R YI+A+ S VLAKK ES+ TA E+M+ L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

A0A5D3C269 Gag/pol protein1.5e-1451.81Show/hide
Query:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL
        +DD +FVL ++CP +S  N T+ V EAY+RW + NEK+R Y++A+ S VLAKK ES+ TA E+M+ L  + GQ S Q KHD L
Subjt:  MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAAGAAGTTTGTTCTGACGAAGGAATGTCCTCCACTATCAACACTTAATACAACACAAAATGTTTGTGAGGCATATGATCGTTGGAAAAGGATGAACGAAAA
GTCAAGAATCTATATTGTGGCAAATTTCTCAAACGTCTTGGCCAAAAAGCTTGAGAGCATAGGAACTGCTTTAGAGATGATGAACATCTTACATGGGATATGTGGGCAAC
TGTCATCTCAGGCAAAACATGATGTTTTATGGTCATTAGAAATGCTAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGACAAGAAGTTTGTTCTGACGAAGGAATGTCCTCCACTATCAACACTTAATACAACACAAAATGTTTGTGAGGCATATGATCGTTGGAAAAGGATGAACGAAAA
GTCAAGAATCTATATTGTGGCAAATTTCTCAAACGTCTTGGCCAAAAAGCTTGAGAGCATAGGAACTGCTTTAGAGATGATGAACATCTTACATGGGATATGTGGGCAAC
TGTCATCTCAGGCAAAACATGATGTTTTATGGTCATTAGAAATGCTAAGATGA
Protein sequenceShow/hide protein sequence
MDDKKFVLTKECPPLSTLNTTQNVCEAYDRWKRMNEKSRIYIVANFSNVLAKKLESIGTALEMMNILHGICGQLSSQAKHDVLWSLEMLR