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Sed0004405 (gene) of Chayote v1 genome

Gene IDSed0004405
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 23
Genome locationLG03:16754923..16755111
RNA-Seq ExpressionSed0004405
SyntenySed0004405
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]1.2e-0964.52Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        MEMK  A A+FI V ASL+MVLAS+E ++PAPGPSS  SATLP +G  +GA+A +LI YCLQ
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]2.2e-0866.07Show/hide
Query:  AIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        A A+FI V+ASL+MVLAS+E ++PAPGPSS+ASATLP +G  +GA+A +LI YCLQ
Subjt:  AIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
PNT29922.1 hypothetical protein POPTR_006G056200 [Populus trichocarpa]2.5e-0450Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        ME+KK++ A  +VV+AS++  LA++E+SAPAP P+S ASATLP +G+ +GA+  +   Y LQ
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]5.1e-0557.38Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        ME+KK++ A  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]1.4e-0559.02Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        ME+KK++IA  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
TrEMBL top hitse value%identityAlignment
A0A200QP69 Uncharacterized protein2.1e-0446.77Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        M+MKK++ A  I V+AS+N  LA++E  APAPGP+S+A  T+P IG+ VGA+  +   + +Q
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
A0A2K1ZXB0 Uncharacterized protein1.2e-0450Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        ME+KK++ A  +VV+AS++  LA++E+SAPAP P+S ASATLP +G+ +GA+  +   Y LQ
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
A0A2P5CAP7 Uncharacterized protein2.5e-0557.38Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        ME+KK++ A  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
A0A2P5F1L3 Uncharacterized protein6.5e-0659.02Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        ME+KK++IA  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
A0A5D3E271 Arabinogalactan peptide 23-like5.7e-1064.52Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
        MEMK  A A+FI V ASL+MVLAS+E ++PAPGPSS  SATLP +G  +GA+A +LI YCLQ
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 239.7e-0750.82Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        MEMKK+A    +  +AS+  V+A+ EV APAPGP+S+ASA LP +G+ VGA+  +L +Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
Arabidopsis top hitse value%identityAlignment
AT3G57690.1 arabinogalactan protein 236.9e-0850.82Show/hide
Query:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL
        MEMKK+A    +  +AS+  V+A+ EV APAPGP+S+ASA LP +G+ VGA+  +L +Y L
Subjt:  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAG
CGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAG
CGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA
Protein sequenceShow/hide protein sequence
MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ