; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004448 (gene) of Chayote v1 genome

Gene IDSed0004448
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG08:6088007..6088782
RNA-Seq ExpressionSed0004448
SyntenySed0004448
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150050.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.2e-3789.13Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSEKM++HAMASAS ALDLFDVSD LSLASHIKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]9.0e-3889.13Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSEKM++HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

XP_022144999.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]2.9e-3687.64Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGK  VKETDMSEKM++HAMASASHALDLFDVSDCLSLA+HIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]6.7e-4191.4Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH
        MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]2.8e-3990.32Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH
        MLEGKATVKETDMSEKM+ HAMASASHALDLFDVSD LSLA+HIKK+FDR YGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK+ S+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH

TrEMBL top hitse value%identityAlignment
A0A1S3CJ38 Dynein light chain4.4e-3889.13Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKATVKETDMSEKM++HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

A0A1S3UQ79 Dynein light chain4.1e-3680.43Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKA VKETDMS KM++HAMA+ASHALDL+DVSDC+S+A+HIKKEFD  YG+GWQCVVGSNFGC+FTHS G+FIYF+LETLNFLIFK +S
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

A0A6J1CTX2 Dynein light chain1.4e-3687.64Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        MLEGK  VKETDMSEKM++HAMASASHALDLFDVSDCLSLA+HIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+LETLNFLIFK
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK

A0A6J1EZZ1 Dynein light chain3.2e-4191.4Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH
        MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH

A0A6J1I806 Dynein light chain3.2e-4191.4Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH
        MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic4.2e-1442.22Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P61285 Dynein light chain 1, cytoplasmic4.2e-1442.22Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63167 Dynein light chain 1, cytoplasmic4.2e-1442.22Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63168 Dynein light chain 1, cytoplasmic4.2e-1442.22Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

P63169 Dynein light chain 1, cytoplasmic4.2e-1442.22Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA
        M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKA

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 112.9e-1871.19Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCV
        MLEGKA V+++DM  KM++ AMA AS ALDLFDV DC S+A HIKKEFD  YGSGWQCV
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.2e-3577.17Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKA V+++DM  KM++ AMA AS ALDLFDV DC S+A HIKKEFD  YGSGWQCVVGSNFGCFFTHSKG+FIYF LETL FLIFK AS
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

AT3G16120.1 Dynein light chain type 1 family protein4.9e-3473.91Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS
        MLEGKA V+ETDM  KM++ AM  AS +LDLFDV D +S+A+HIKKEFD  YGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFK A+
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS

AT4G27360.1 Dynein light chain type 1 family protein1.0e-2356.04Show/hide
Query:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAA
        MLEGKA + +TDM + MK  A++ AS ALD FDV++   +A  IKKEFDR+YGSGWQC+VG++FG F TH  G FI+FS+ +L  L+FK +
Subjt:  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAA

AT5G20110.1 Dynein light chain type 1 family protein2.0e-1447.44Show/hide
Query:  DMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK
        DM   M+ HA   A   LD  +      +A ++KKEFD+ YG  W C+VGS+FG F THS G FIYFS++ L  L+FK
Subjt:  DMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAAGGGAAAGCCACGGTGAAAGAAACCGACATGTCGGAGAAGATGAAGCTTCACGCCATGGCCTCTGCATCTCACGCTCTTGATCTCTTCGACGTGTCGGATTG
CCTCTCTCTTGCTTCCCATATCAAAAAGGAATTTGATCGGACTTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCTAAGGGCT
CTTTCATTTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTCATTAA
mRNA sequenceShow/hide mRNA sequence
GAAGTATTCCATACGCAAAACAGCAGTCCTTGTAAGCGGTGAGAAAGAAATAAAGAAAGATAGAGAGAGAGGAAAACCAAGAAGATGCTGGAAGGGAAAGCCACGGTGAA
AGAAACCGACATGTCGGAGAAGATGAAGCTTCACGCCATGGCCTCTGCATCTCACGCTCTTGATCTCTTCGACGTGTCGGATTGCCTCTCTCTTGCTTCCCATATCAAAA
AGGAATTTGATCGGACTTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCTAAGGGCTCTTTCATTTATTTTTCTCTTGAAACT
CTCAATTTTCTCATCTTTAAAGCTGCTTCTCATTAATTCCTTCCTCAATTATTGTTACCCATCCACGAAACACAGATGAAATTATTTTATTTTCAGTGGCAGCTTCGTCT
TTTCACTCTTCTCAATTTACATTGCACCAACCCTGTATATCTATGTGTATCACAATTGATTCTCTCAAACTTCTTGTCGTAGTATGTTTGATGATCA
Protein sequenceShow/hide protein sequence
MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH