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Sed0004484 (gene) of Chayote v1 genome

Gene IDSed0004484
OrganismSechium edule (Chayote v1)
DescriptionC2H2-like zinc finger protein
Genome locationLG01:70699336..70699809
RNA-Seq ExpressionSed0004484
SyntenySed0004484
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606329.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4865.52Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI
        MEDEE+  QV E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKR+S+Y+S    SS+SS P  VF  S   HHP +LP +PMYI
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI

Query:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
        A HGA+ HCFPN+QQ+F              YYGGVCS NRYQC EDEE+VLN +     DKEKEQKLDLSLHL
Subjt:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

XP_022931139.1 protein LATE FLOWERING [Cucurbita moschata]5.0e-4964.74Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTLLPQYPMYIA
        MEDEE+  QV E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKRLS+Y+SS++ S SS P  +       HHP +LP +P+YIA
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTLLPQYPMYIA

Query:  PHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
         HGAN HCFPNNQQ+F              YYGGVCS NRYQC EDE++VLN +     DKEKEQKLDLSLHL
Subjt:  PHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]2.5e-4865.52Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI
        MEDEE+  QV E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKR+S+Y+S    SS+SS P  VF  +   HHP +LP +PMYI
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI

Query:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
        A HG N HCFPN+QQ+F              YYGGVCS NRYQC EDEENVLN +     DKEKEQKLDLSLHL
Subjt:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

XP_023532770.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]4.3e-4865.52Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI
        MEDEE+   V E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKR+S+Y+S    SS+SS P  VF  S   HHP +LP +PMYI
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI

Query:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
        A HGAN HCFPN+QQ+F              YYGGVCS NRYQC EDEE+VLN +     DKEKEQKLDLSLHL
Subjt:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]3.0e-4968.72Show/hide
Query:  MEDEEKYSQVGETSS--IEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSS----PPPLVFEASH-HHHPTLLP
        ME EEK SQV ET++  +EMEE P+RVFPCLFCSR+FQSSQALGGHQNAHKKERTAARKAKR+S+Y  STNFSS  S    PP LVF ASH  HHP LLP
Subjt:  MEDEEKYSQVGETSS--IEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSS----PPPLVFEASH-HHHPTLLP

Query:  QYPMYIAPHGANFHCFPNNQQLF-----YYGGVCSSNRY-QCVEDEENVLN---------IRADYDKEKEQKLDLSLHL
        Q P+YIA HG N HCFPNNQQL      Y GGVC+SNRY QC  DEEN+LN          R ++DKEKEQKLDLSLHL
Subjt:  QYPMYIAPHGANFHCFPNNQQLF-----YYGGVCSSNRY-QCVEDEENVLN---------IRADYDKEKEQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A1S3BIU8 protein LATE FLOWERING-like1.1e-4161.33Show/hide
Query:  MEDEEKYSQVGETSS---------IEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEAS-HHHHPT
        ME EE  S+V E  +         +EMEE PSRVFPCLFCSR+FQSSQALGGHQNAHKKERTAARKAKR+ +Y+ S   S  S+P  LVF AS   HHP 
Subjt:  MEDEEKYSQVGETSS---------IEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEAS-HHHHPT

Query:  LLPQYPMYIAPHGANFHCFPNNQQLFY-----YGGVCSSNRYQCVEDEENVLN---------IRADYDKEKEQKLDLSLHL
         L  +P+YIA HGAN HCFPNNQQL Y      GGVCSSNRY   +DEEN+LN          R ++DKEKEQKLDLSLHL
Subjt:  LLPQYPMYIAPHGANFHCFPNNQQLFY-----YGGVCSSNRYQCVEDEENVLN---------IRADYDKEKEQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like9.3e-4166.45Show/hide
Query:  MEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEAS-HHHHPTLLPQYPMYIAPHGANFHCFPNNQQLF
        MEE PSRVFPCLFCSR+FQSSQALGGHQNAHKKERTAARKAKR+ +Y+ S   S  S+P  LVF AS   HHP  L  +P+YIA HGAN HCFPNNQQL 
Subjt:  MEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEAS-HHHHPTLLPQYPMYIAPHGANFHCFPNNQQLF

Query:  Y-----YGGVCSSNRYQCVEDEENVLN---------IRADYDKEKEQKLDLSLHL
        Y      GGVCSSNRY   +DEEN+LN          R ++DKEKEQKLDLSLHL
Subjt:  Y-----YGGVCSSNRYQCVEDEENVLN---------IRADYDKEKEQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING2.4e-4964.74Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTLLPQYPMYIA
        MEDEE+  QV E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKRLS+Y+SS++ S SS P  +       HHP +LP +P+YIA
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTLLPQYPMYIA

Query:  PHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
         HGAN HCFPNNQQ+F              YYGGVCS NRYQC EDE++VLN +     DKEKEQKLDLSLHL
Subjt:  PHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

A0A6J1HVN7 protein LATE FLOWERING-like2.2e-4265.06Show/hide
Query:  KYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH--HHPTLLPQYPMYIAPHG
        K+ Q   ++S  MEE PSR+FPCLFCSR+FQSSQALGGHQNAHKKERTAARKAKR+S+YA+S + S SSS    VF A+HH  HHP L P +PMYIA + 
Subjt:  KYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH--HHPTLLPQYPMYIAPHG

Query:  ANFHCFPNNQQLF-----YYGGVCSSNRYQ-----CVEDEENVLNIRADY--DKEKEQKLDLSLHL
        AN HCFPNN  LF     YYGGVCSSNRY       VEDE+NVLN + +   DK+KEQKLDLSLHL
Subjt:  ANFHCFPNNQQLF-----YYGGVCSSNRYQ-----CVEDEENVLNIRADY--DKEKEQKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like1.2e-4865.52Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI
        MEDEE+  QV E+SS+EMEE PSR+FPCLFCSR+FQ+SQALGGHQNAHKKERTA RKAKR+S+Y+S    SS+SS P  VF  +   HHP +LP +PMYI
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHH-HHPTLLPQYPMYI

Query:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL
        A HG N HCFPN+QQ+F              YYGGVCS NRYQC EDEENVLN +     DKEKEQKLDLSLHL
Subjt:  APHGANFHCFPNNQQLF--------------YYGGVCSSNRYQCVEDEENVLNIRADY--DKEKEQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 21.0e-0750.7Show/hide
Query:  SQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPP
        S     SS  +E+P  RVF C +C R+F SSQALGGHQNAHK ERT A+K++ L     S+N   S  P P
Subjt:  SQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPP

Q39262 Zinc finger protein 39.0e-0942.35Show/hide
Query:  VGETSSIEMEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTL
        + +T+SI  E   S   ++F C +C R F SSQALGGHQNAHK+ERT A++ +R++  AS++ F       PL F   +++H +L
Subjt:  VGETSSIEMEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTL

Q39263 Zinc finger protein 41.0e-0743.37Show/hide
Query:  SQVGETSSIE--MEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS------NYASSTNFSSSSSPPPL
        S   E+S+ E   ++ PS   RVF C +C R+F SSQALGGHQNAHK+ERT A++A R+          SS+N++++++   L
Subjt:  SQVGETSSIE--MEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS------NYASSTNFSSSSSPPPL

Q39266 Zinc finger protein 78.5e-0737.96Show/hide
Query:  ETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTN--FSSSSSPPPLVFEASHHHHPTLLPQYPMYIAPHGANFHCF
        +T S + E  P RVF C +C R+F SSQALGGHQNAHK+ERT A++A  +       +  ++ +SS   +   +   HH    PQ P+    H   +  F
Subjt:  ETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTN--FSSSSSPPPLVFEASHHHHPTLLPQYPMYIAPHGANFHCF

Query:  PNNQQLFY
         N   LF+
Subjt:  PNNQQLFY

Q9FKA9 Protein LATE FLOWERING5.7e-1938.6Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHH-------------
        +E EE+     E +  +      R+FPCLFCSR+F SSQALGGHQNAHKKERTAAR+AKR  ++ ++ +F  +   P  +   S HH             
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHH-------------

Query:  -HPTLLPQYPMYIAPHGANFHCFPNNQQLFYYGGVCSSNRYQCVEDEENVLNIRADYDKEKEQKLDLSLHL
          PT+ P +P++    G++     ++Q     GG C   R   ++   NV+N     DK K+Q LDLSLHL
Subjt:  -HPTLLPQYPMYIAPHGANFHCFPNNQQLFYYGGVCSSNRYQCVEDEENVLNIRADYDKEKEQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G66140.1 zinc finger protein 47.1e-0943.37Show/hide
Query:  SQVGETSSIE--MEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS------NYASSTNFSSSSSPPPL
        S   E+S+ E   ++ PS   RVF C +C R+F SSQALGGHQNAHK+ERT A++A R+          SS+N++++++   L
Subjt:  SQVGETSSIE--MEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS------NYASSTNFSSSSSPPPL

AT5G01860.1 C2H2 and C2HC zinc fingers superfamily protein4.2e-0950.75Show/hide
Query:  EPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS-NY----------ASSTNFSSSSS
        E  +RVF C FC +EF +SQALGGHQNAHK+ER+ A++ K +  NY           S  +FSSSSS
Subjt:  EPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLS-NY----------ASSTNFSSSSS

AT5G25160.1 zinc finger protein 36.4e-1042.35Show/hide
Query:  VGETSSIEMEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTL
        + +T+SI  E   S   ++F C +C R F SSQALGGHQNAHK+ERT A++ +R++  AS++ F       PL F   +++H +L
Subjt:  VGETSSIEMEEPPS---RVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTL

AT5G48890.1 C2H2-like zinc finger protein4.0e-2038.6Show/hide
Query:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHH-------------
        +E EE+     E +  +      R+FPCLFCSR+F SSQALGGHQNAHKKERTAAR+AKR  ++ ++ +F  +   P  +   S HH             
Subjt:  MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHH-------------

Query:  -HPTLLPQYPMYIAPHGANFHCFPNNQQLFYYGGVCSSNRYQCVEDEENVLNIRADYDKEKEQKLDLSLHL
          PT+ P +P++    G++     ++Q     GG C   R   ++   NV+N     DK K+Q LDLSLHL
Subjt:  -HPTLLPQYPMYIAPHGANFHCFPNNQQLFYYGGVCSSNRYQCVEDEENVLNIRADYDKEKEQKLDLSLHL

AT5G57520.1 zinc finger protein 27.1e-0950.7Show/hide
Query:  SQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPP
        S     SS  +E+P  RVF C +C R+F SSQALGGHQNAHK ERT A+K++ L     S+N   S  P P
Subjt:  SQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATGAAGAAAAGTATTCACAAGTAGGTGAAACCAGCAGCATTGAAATGGAAGAACCCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGGGAGTTTCAAAG
CTCTCAAGCTTTAGGTGGCCATCAAAATGCTCACAAGAAAGAGAGGACCGCGGCCAGGAAGGCAAAGCGGTTATCCAACTACGCGTCGTCGACCAATTTCTCGTCCTCAT
CGTCGCCGCCGCCATTGGTTTTCGAAGCCAGCCATCATCATCACCCAACTTTGTTGCCACAATATCCAATGTACATTGCACCTCATGGGGCTAATTTTCATTGTTTTCCC
AATAACCAACAATTGTTCTATTATGGTGGGGTTTGTTCAAGCAATAGATATCAATGTGTGGAAGATGAAGAAAATGTGTTGAATATTAGGGCAGATTATGACAAGGAAAA
AGAACAAAAGCTTGATCTTTCTCTTCATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATGAAGAAAAGTATTCACAAGTAGGTGAAACCAGCAGCATTGAAATGGAAGAACCCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGGGAGTTTCAAAG
CTCTCAAGCTTTAGGTGGCCATCAAAATGCTCACAAGAAAGAGAGGACCGCGGCCAGGAAGGCAAAGCGGTTATCCAACTACGCGTCGTCGACCAATTTCTCGTCCTCAT
CGTCGCCGCCGCCATTGGTTTTCGAAGCCAGCCATCATCATCACCCAACTTTGTTGCCACAATATCCAATGTACATTGCACCTCATGGGGCTAATTTTCATTGTTTTCCC
AATAACCAACAATTGTTCTATTATGGTGGGGTTTGTTCAAGCAATAGATATCAATGTGTGGAAGATGAAGAAAATGTGTTGAATATTAGGGCAGATTATGACAAGGAAAA
AGAACAAAAGCTTGATCTTTCTCTTCATTTATAG
Protein sequenceShow/hide protein sequence
MEDEEKYSQVGETSSIEMEEPPSRVFPCLFCSREFQSSQALGGHQNAHKKERTAARKAKRLSNYASSTNFSSSSSPPPLVFEASHHHHPTLLPQYPMYIAPHGANFHCFP
NNQQLFYYGGVCSSNRYQCVEDEENVLNIRADYDKEKEQKLDLSLHL