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Sed0004504 (gene) of Chayote v1 genome

Gene IDSed0004504
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan protein 22, putative
Genome locationLG11:634275..636209
RNA-Seq ExpressionSed0004504
SyntenySed0004504
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]3.5e-1776.56Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA  GPSN GA IDQGIAYVLLL+ALA+T++ H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]5.3e-1362.5Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        M+ M+L A+PI+GFMFL LL+  +G     SPAP GPSN G TIDQGIAYVLL++ALA+T+L H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

KDP33656.1 hypothetical protein JCGZ_07227 [Jatropha curcas]3.7e-1470.31Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MSPM L A+PI+GFMFL LLQL +G +   SPA  GPS+ G TIDQGIAYVL+LVALAVT+LFH
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]4.2e-1881.25Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPA AGPSN GA IDQGIAYVLLL+ALAVT++ H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]1.5e-1262.5Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MSPMKL  +PI+G +FL L+QL+YG     SPAP GPS+ G  IDQGIA++L+LVALAVT+L H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

TrEMBL top hitse value%identityAlignment
A0A067KBQ4 Uncharacterized protein1.8e-1470.31Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MSPM L A+PI+GFMFL LLQL +G +   SPA  GPS+ G TIDQGIAYVL+LVALAVT+LFH
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

A0A0A0LIU0 Uncharacterized protein2.0e-1881.25Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPA AGPSN GA IDQGIAYVLLL+ALAVT++ H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

A0A2C9UBX1 Uncharacterized protein9.7e-1364.06Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MSPMKL A    GFM   LLQL YG     SPAP GP++ G +IDQGIAY+LLLVALA+T+LFH
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

A0A2C9W3S5 Uncharacterized protein7.5e-1362.5Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MSPMKL  +PI+G +FL L+QL+YG     SPAP GPS+ G  IDQGIA++L+LVALAVT+L H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

A0A5A7V7C0 Putative Arabinogalactan protein 221.7e-1776.56Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA  GPSN GA IDQGIAYVLLL+ALA+T++ H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.0e-0645.76Show/hide
Query:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        +T   +  F+F ++L LA   S  ++PAPA P++ G +IDQGIAY+L++VAL +T+L H
Subjt:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

Q8L9T8 Arabinogalactan protein 411.5e-0757.41Show/hide
Query:  IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        IV  +F ILL +A  H+   +PAPA P++ G TIDQGIAYVL+LVAL +T+L H
Subjt:  IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

Q9FK16 Arabinogalactan protein 227.7e-0743.75Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        M+ +K     +  F+ + ++ L    SH  SPAPA P++ G +IDQGIAYVL++VALA+T+  H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

Q9M373 Arabinogalactan protein 202.7e-0438.98Show/hide
Query:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        +  + +  F+F ++   A   S  ++PAP+ P++ G +IDQGIAY+L++VAL +T+L H
Subjt:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.5e-0745.76Show/hide
Query:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        +T   +  F+F ++L LA   S  ++PAPA P++ G +IDQGIAY+L++VAL +T+L H
Subjt:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

AT3G61640.1 arabinogalactan protein 201.9e-0538.98Show/hide
Query:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        +  + +  F+F ++   A   S  ++PAP+ P++ G +IDQGIAY+L++VAL +T+L H
Subjt:  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

AT5G24105.1 arabinogalactan protein 411.1e-0857.41Show/hide
Query:  IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        IV  +F ILL +A  H+   +PAPA P++ G TIDQGIAYVL+LVAL +T+L H
Subjt:  IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

AT5G53250.1 arabinogalactan protein 225.5e-0843.75Show/hide
Query:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH
        M+ +K     +  F+ + ++ L    SH  SPAPA P++ G +IDQGIAYVL++VALA+T+  H
Subjt:  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCCGATGAAGCTAACCGCCGTTCCGATCGTCGGATTCATGTTCTTGATTCTTCTGCAATTGGCCTACGGCCACTCGCACGATATTTCTCCGGCGCCGGCGGGTCC
TTCGAACCACGGCGCTACAATTGACCAAGGGATTGCTTACGTTCTTCTTTTGGTTGCTCTCGCCGTTACCTTCCTCTTCCATTGA
mRNA sequenceShow/hide mRNA sequence
TTTCCATTCTTCGAATCCAAATTCATTTTCATTTTGAGCATTCTCACTTTTTTTTTATTCCTTTAAATTTCCAAAAATTATTCGATTCCAGTCGAAAATTATGAGTCCGA
TGAAGCTAACCGCCGTTCCGATCGTCGGATTCATGTTCTTGATTCTTCTGCAATTGGCCTACGGCCACTCGCACGATATTTCTCCGGCGCCGGCGGGTCCTTCGAACCAC
GGCGCTACAATTGACCAAGGGATTGCTTACGTTCTTCTTTTGGTTGCTCTCGCCGTTACCTTCCTCTTCCATTGATTTTTTTTTTTTACAGAGCTGTGTTATAGATTTAA
ATAAATAATTTCATTTGGATATGTAATTTTCTATTGGATAGTTTTTCTCATGTATTTGGGAGGTATTGAAATATAATTTGTTATGTTAATTTGGTGATAATCGATGTTTA
TGTATTTGTAGTTTTTCTTTATTTGTTGGTGAAGAGATTGAAATATAATTTGTTTGGCTAGACGACTTTGAAATATTGACATTTAGTGCACAATAAAATCTTTGTTTTAA
GTTGCCTCAACCATTGACTTGTG
Protein sequenceShow/hide protein sequence
MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH