; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004530 (gene) of Chayote v1 genome

Gene IDSed0004530
OrganismSechium edule (Chayote v1)
DescriptionHistone H2A
Genome locationLG11:3531747..3532975
RNA-Seq ExpressionSed0004530
SyntenySed0004530
Gene Ontology termsGO:0031507 - heterochromatin assembly (biological process)
GO:0000775 - chromosome, centromeric region (cellular component)
GO:0000786 - nucleosome (cellular component)
GO:0000792 - heterochromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold
IPR032454 - Histone H2A, C-terminal domain
IPR032458 - Histone H2A conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144786.1 probable histone H2A.5 [Cucumis sativus]3.8e-5383.8Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

XP_008454292.1 PREDICTED: probable histone H2A.5 [Cucumis melo]1.3e-5384.51Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

XP_022150784.1 probable histone H2A.5 [Momordica charantia]1.9e-5283.69Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK--------TAEKSQESPR
        LQGVTIASGGVLPNINPVLLPKK        TAEK+ +SP+
Subjt:  LQGVTIASGGVLPNINPVLLPKK--------TAEKSQESPR

XP_022946249.1 histone H2A.1-like [Cucurbita moschata]9.3e-5282.39Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R+KISKSAKAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKKT-------AEKSQESPRNA
        LQGVTIASGGVLPNI+PVLLPKK+       AEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKKT-------AEKSQESPRNA

XP_038890710.1 probable histone H2A.5 [Benincasa hispida]2.2e-5384.51Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R KISKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRH+LLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

TrEMBL top hitse value%identityAlignment
A0A0A0LLV9 Histone H2A1.8e-5383.8Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

A0A1S3BZ15 Histone H2A6.3e-5484.51Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

A0A5A7TYC1 Histone H2A6.3e-5484.51Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA
        LQGVTIASGGVLPNINPVLLPKK       TAEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKK-------TAEKSQESPRNA

A0A6J1DB39 Histone H2A9.1e-5383.69Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKK--------TAEKSQESPR
        LQGVTIASGGVLPNINPVLLPKK        TAEK+ +SP+
Subjt:  LQGVTIASGGVLPNINPVLLPKK--------TAEKSQESPR

A0A6J1G397 Histone H2A4.5e-5282.39Show/hide
Query:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL
        MEGTKGAGGR  GG R+KISKSAKAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEYLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +L
Subjt:  MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELREL

Query:  LQGVTIASGGVLPNINPVLLPKKT-------AEKSQESPRNA
        LQGVTIASGGVLPNI+PVLLPKK+       AEK+Q+SP+ A
Subjt:  LQGVTIASGGVLPNINPVLLPKKT-------AEKSQESPRNA

SwissProt top hitse value%identityAlignment
A2WQG7 Probable histone H2A.58.5e-4877.27Show/hide
Query:  KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG
        KGA GR  GG R K +S+S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAAEVLEL+GNAARDNKKNRI PRHVLLA++ND+EL +LL G
Subjt:  KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG

Query:  VTIASGGVLPNINPVLLPKKTAEKSQESPRNA
        VTIA GGVLPNINPVLLPKKTAEK+  + + A
Subjt:  VTIASGGVLPNINPVLLPKKTAEKSQESPRNA

P19177 Histone H2A3.2e-4774.62Show/hide
Query:  KGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGV
        KG GGR GG  +  +++S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAAEVLEL+GNAARDNKK RI PRH+LLAV+ND+EL +LL GV
Subjt:  KGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGV

Query:  TIASGGVLPNINPVLLPKKTAEKSQESPRN
        T A GGVLPNINPVLLPKKTAEK+ + P++
Subjt:  TIASGGVLPNINPVLLPKKTAEKSQESPRN

P25469 Histone H2A.13.5e-4978.46Show/hide
Query:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG
        TKGAGGR GG  +  ++KS KAGLQFPVGRIGRYLKKGRYA+R  +GAPIYLAAVLEYLAAEVLEL+GNAARDNKK+RI PRHVLLAV+ND+EL +LL G
Subjt:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG

Query:  VTIASGGVLPNINPVLLPKKTAEKSQESPR
        VTIASGGVLPNINPVLLPKK+A   ++SP+
Subjt:  VTIASGGVLPNINPVLLPKKTAEKSQESPR

Q94E96 Probable histone H2A.58.5e-4877.27Show/hide
Query:  KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG
        KGA GR  GG R K +S+S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAAEVLEL+GNAARDNKKNRI PRHVLLA++ND+EL +LL G
Subjt:  KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG

Query:  VTIASGGVLPNINPVLLPKKTAEKSQESPRNA
        VTIA GGVLPNINPVLLPKKTAEK+  + + A
Subjt:  VTIASGGVLPNINPVLLPKKTAEKSQESPRNA

Q94F49 Probable histone H2A.51.9e-4774.62Show/hide
Query:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG
        T+GAGGR GG  +  +SKS KAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLAAEVLEL+GNAARDNKKNRINPRH+ LA++ND+EL  LL G
Subjt:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG

Query:  VTIASGGVLPNINPVLLPKKTAEKSQESPR
        VTIASGGVLPNINPVLLPKK+   S ++ +
Subjt:  VTIASGGVLPNINPVLLPKKTAEKSQESPR

Arabidopsis top hitse value%identityAlignment
AT1G51060.1 histone H2A 105.1e-4072.03Show/hide
Query:  GRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTI
        G+T G G AK   ++S+KAGLQFPVGRI R+LKKG+YA+R  AGAP+YLAAVLEYLAAEVLEL+GNAARDNKK RI PRH+ LAV+ND+EL +LL  VTI
Subjt:  GRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTI

Query:  ASGGVLPNINPVLLPKKT
        A+GGV+PNI+ +LLPKKT
Subjt:  ASGGVLPNINPVLLPKKT

AT5G02560.1 histone H2A 129.6e-4772.46Show/hide
Query:  KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQ
        KGA GR  GGG  K  +S+S K+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYLAAEVLEL+GNAARDNKKNRI PRHVLLAV+ND+EL  LL+
Subjt:  KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQ

Query:  GVTIASGGVLPNINPVLLPKKTAE-----KSQESPRNA
        GVTIA GGVLPNINP+LLPKK+ +     K+ +SP  A
Subjt:  GVTIASGGVLPNINPVLLPKKTAE-----KSQESPRNA

AT5G02560.2 histone H2A 121.1e-4261.73Show/hide
Query:  KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAE------------------------VLELSGNAARDNK
        KGA GR  GGG  K  +S+S K+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYLAAE                        VLEL+GNAARDNK
Subjt:  KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAE------------------------VLELSGNAARDNK

Query:  KNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKKTAE-----KSQESPRNA
        KNRI PRHVLLAV+ND+EL  LL+GVTIA GGVLPNINP+LLPKK+ +     K+ +SP  A
Subjt:  KNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKKTAE-----KSQESPRNA

AT5G27670.1 histone H2A 71.3e-4874.62Show/hide
Query:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG
        T+GAGGR GG  +  +SKS KAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLAAEVLEL+GNAARDNKKNRINPRH+ LA++ND+EL  LL G
Subjt:  TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQG

Query:  VTIASGGVLPNINPVLLPKKTAEKSQESPR
        VTIASGGVLPNINPVLLPKK+   S ++ +
Subjt:  VTIASGGVLPNINPVLLPKKTAEKSQESPR

AT5G59870.1 histone H2A 61.2e-4171.09Show/hide
Query:  KGAGGR--TGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQ
        K  GGR   G      +SKS KAGLQFPVGRI R+LKKGRYA+R   GAP+Y+AAVLEYLAAEVLEL+GNAARDNKK+RI PRH+LLA++ND+EL +LL 
Subjt:  KGAGGR--TGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQ

Query:  GVTIASGGVLPNINPVLLPKKTAEKSQE
        GVTIA GGVLPNIN VLLPKK+A K  E
Subjt:  GVTIASGGVLPNINPVLLPKKTAEKSQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAACTAAAGGCGCCGGAGGAAGAACAGGCGGCGGCGGCAGAGCAAAGATCTCCAAATCCGCAAAGGCCGGACTCCAATTCCCCGTCGGAAGGATCGGCCGCTA
CCTCAAGAAAGGCCGCTACGCCAAACGCACCGCCGCCGGTGCTCCAATCTACCTCGCCGCCGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAATTGTCTGGAAATGCTG
CGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTGCTTTTGGCGGTGAAGAACGACGATGAGCTTCGAGAATTGCTTCAAGGAGTCACCATTGCTAGCGGCGGA
GTTCTCCCGAACATCAATCCGGTTCTTCTTCCGAAGAAGACGGCTGAGAAATCTCAGGAATCGCCAAGAAATGCCTAA
mRNA sequenceShow/hide mRNA sequence
CTATCGCCATCACAAAAGCATAAAATCCAGAGATTCAGAATCAAAGCATTCAACAATGGAGGGAACTAAAGGCGCCGGAGGAAGAACAGGCGGCGGCGGCAGAGCAAAGA
TCTCCAAATCCGCAAAGGCCGGACTCCAATTCCCCGTCGGAAGGATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAACGCACCGCCGCCGGTGCTCCAATCTACCTC
GCCGCCGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAATTGTCTGGAAATGCTGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTGCTTTTGGCGGTGAA
GAACGACGATGAGCTTCGAGAATTGCTTCAAGGAGTCACCATTGCTAGCGGCGGAGTTCTCCCGAACATCAATCCGGTTCTTCTTCCGAAGAAGACGGCTGAGAAATCTC
AGGAATCGCCAAGAAATGCCTAAATTAAGTACAGGTTTCTGAGATTTTGAACTTCATTTTGTAAATTTTTTAGGAGATTCTCTTTGAATCCTGAGTTAGTTGGAC
Protein sequenceShow/hide protein sequence
MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGG
VLPNINPVLLPKKTAEKSQESPRNA