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Sed0004535 (gene) of Chayote v1 genome

Gene IDSed0004535
OrganismSechium edule (Chayote v1)
Descriptionmyb-like transcription factor family protein
Genome locationLG04:45100330..45101887
RNA-Seq ExpressionSed0004535
SyntenySed0004535
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009723 - response to ethylene (biological process)
GO:0009733 - response to auxin (biological process)
GO:0009739 - response to gibberellin (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7534517.1 Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa]4.5e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

KAG7538238.1 Zinc finger CCHC-type [Arabidopsis suecica]4.5e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

KAG7606344.1 SANT/Myb domain [Arabidopsis thaliana x Arabidopsis arenosa]3.1e-0756.9Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F ++S+SNL
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

NP_200495.1 myb-like transcription factor family protein [Arabidopsis thaliana]4.5e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

XP_002864483.1 transcription factor MYBS3 [Arabidopsis lyrata subsp. lyrata]4.5e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

TrEMBL top hitse value%identityAlignment
A0A178UGL6 (thale cress) hypothetical protein2.2e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

A0A1U8BDN4 transcription factor DIVARICATA-like4.9e-0658.7Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRR
        +EI+G+GDW NI+   V T++ +Q++SHAQKYFLRL +P  RKRRR
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRR

D7MM75 DNA-binding family protein2.2e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

Q9FJS9 At5g568402.2e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

V4LJV3 Uncharacterized protein3.7e-0653.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+ K V+TKS TQV+SHAQKYFLR    +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS14.7e-0650Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISS
        ++ FGKGDW +I+   VI+++ TQV+SHAQKYF+RL   ++R RRR     I+S
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISS

Q2V9B0 Transcription factor MYB1R11.0e-0551.92Show/hide
Query:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSS
        GKGDW  I+   V T++ TQV+SHAQKYFLR +  ++R+RRR   F I++ S
Subjt:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSS

Q8LH59 Transcription factor MYBS14.7e-0650Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISS
        ++ FGKGDW +I+   VI+++ TQV+SHAQKYF+RL   ++R RRR     I+S
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISS

Q9FKF9 Probable transcription factor At5g616206.1e-0660.98Show/hide
Query:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRR
        GKGDW  IA   V T++ TQV+SHAQKYF+RL +   RKRR
Subjt:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRR

Q9FNN6 Transcription factor SRM12.8e-0645.61Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN
        ++ +GKGDW +I+   V+T++ TQV+SHAQKYF+RL   +++ RRR     I+S  N
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN

Arabidopsis top hitse value%identityAlignment
AT1G49010.1 Duplicated homeodomain-like superfamily protein1.5e-0747.37Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN
        ++ FGKGDW +I+   VI+++ TQV+SHAQKYF+RL   ++R RRR     I++ +N
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN

AT1G70000.1 myb-like transcription factor family protein9.7e-0750Show/hide
Query:  TRMEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSS
        T +   GKGDW  I+   V T++ TQV+SHAQKYFLR T   +R+RRR   F I+  S
Subjt:  TRMEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSS

AT5G08520.1 Duplicated homeodomain-like superfamily protein2.0e-0745.61Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN
        ++ +GKGDW +I+   V+T++ TQV+SHAQKYF+RL   +++ RRR     I+S  N
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSN

AT5G56840.1 myb-like transcription factor family protein4.2e-1053.45Show/hide
Query:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL
        +E  GKGDW  I+   V+TKS TQV+SHAQKYFLR T  +  KRRR   F + S+ N+
Subjt:  MEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNL

AT5G61620.1 myb-like transcription factor family protein4.4e-0760.98Show/hide
Query:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRR
        GKGDW  IA   V T++ TQV+SHAQKYF+RL +   RKRR
Subjt:  GKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAATTTGTCTCGTCGTCACCACCGCCACCACCATCACCACCTCGTAATCAAACGATGAATATTGAGAATGGTTTTAACCCTACTTCGTTCTACATTCCGTGTCC
TAATCAAGATCCAATATTGGATAGTCAAGTTGAGATACCTCCATTTGATCCGACTGAAAATATGATGTCTGCGATGCCTTGGATTGCAACGTCGCCGCCGCCTTCCCCGC
CTCGTAATCAAATGCCGTCGTCGTCCGTGCCTTTTAATCAAACAATGAATCTTGAGAATAATTTAAACCCTACTTCGTTCTTTAATCCAATTCTTGATCCGAATCCAACG
CTCGTGAGACCAGTCGAGATGGATGCATTCAACCCGATCGAAAATATATTGTTTGAGAATAAGTGGACTGCAATGTCGTCGTCGTTCCTGCCTTGTAATCAAACTACGAA
TACCAAGAATCTTGATTCTAGTCTGTTTCCTCATGTATACAAGACGAAGGCTGATATTATTTGCGATAATCATTTAGAGGCATATTGTTCTGATTCATCTTCAGTTAGAA
CTGCCATTGATCGGGCCCGTCGGCGGCATCGGCAGTATCTTCGTCGTCCACTCAATTTCCGCCGCTGTGCAATGAGGTTGAAGTTGCGACTCACAGCAGAGCCGACTCAT
CGACGTTTAAAAGAAAGTGGAGCGTTCAAGAACACAAGAATGGAGATATTTGGCAAAGGTGATTGGACAAACATCGCAGATAAAGTAGTGATTACAAAATCAAATACACA
AGTGTCTAGCCATGCCCAAAAATATTTTCTTCGCCTCACGTTACCGATATCGAGAAAAAGGAGAAGAGGTCGAGCATTCATGATATCATCGAGTTCGAACCTGAATTATT
GTCGATGGTTCGTGCTCATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCAATTTGTCTCGTCGTCACCACCGCCACCACCATCACCACCTCGTAATCAAACGATGAATATTGAGAATGGTTTTAACCCTACTTCGTTCTACATTCCGTGTCC
TAATCAAGATCCAATATTGGATAGTCAAGTTGAGATACCTCCATTTGATCCGACTGAAAATATGATGTCTGCGATGCCTTGGATTGCAACGTCGCCGCCGCCTTCCCCGC
CTCGTAATCAAATGCCGTCGTCGTCCGTGCCTTTTAATCAAACAATGAATCTTGAGAATAATTTAAACCCTACTTCGTTCTTTAATCCAATTCTTGATCCGAATCCAACG
CTCGTGAGACCAGTCGAGATGGATGCATTCAACCCGATCGAAAATATATTGTTTGAGAATAAGTGGACTGCAATGTCGTCGTCGTTCCTGCCTTGTAATCAAACTACGAA
TACCAAGAATCTTGATTCTAGTCTGTTTCCTCATGTATACAAGACGAAGGCTGATATTATTTGCGATAATCATTTAGAGGCATATTGTTCTGATTCATCTTCAGTTAGAA
CTGCCATTGATCGGGCCCGTCGGCGGCATCGGCAGTATCTTCGTCGTCCACTCAATTTCCGCCGCTGTGCAATGAGGTTGAAGTTGCGACTCACAGCAGAGCCGACTCAT
CGACGTTTAAAAGAAAGTGGAGCGTTCAAGAACACAAGAATGGAGATATTTGGCAAAGGTGATTGGACAAACATCGCAGATAAAGTAGTGATTACAAAATCAAATACACA
AGTGTCTAGCCATGCCCAAAAATATTTTCTTCGCCTCACGTTACCGATATCGAGAAAAAGGAGAAGAGGTCGAGCATTCATGATATCATCGAGTTCGAACCTGAATTATT
GTCGATGGTTCGTGCTCATCTAG
Protein sequenceShow/hide protein sequence
MTQFVSSSPPPPPSPPRNQTMNIENGFNPTSFYIPCPNQDPILDSQVEIPPFDPTENMMSAMPWIATSPPPSPPRNQMPSSSVPFNQTMNLENNLNPTSFFNPILDPNPT
LVRPVEMDAFNPIENILFENKWTAMSSSFLPCNQTTNTKNLDSSLFPHVYKTKADIICDNHLEAYCSDSSSVRTAIDRARRRHRQYLRRPLNFRRCAMRLKLRLTAEPTH
RRLKESGAFKNTRMEIFGKGDWTNIADKVVITKSNTQVSSHAQKYFLRLTLPISRKRRRGRAFMISSSSNLNYCRWFVLI