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Sed0004543 (gene) of Chayote v1 genome

Gene IDSed0004543
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG01:15912380..15912763
RNA-Seq ExpressionSed0004543
SyntenySed0004543
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057006.1 hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa]4.7e-1345.83Show/hide
Query:  SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW--LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPC
        SLSFSGYL SKDR+  +  S   I+T+DR  ++ V+          C    V +  GER    +VRN+SIRR  ++IR+ +EE    S W V+ SFV PC
Subjt:  SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW--LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPC

Query:  RQCRASKPAVIEPRSVQMPS
        R+CRASKP V++PR +Q PS
Subjt:  RQCRASKPAVIEPRSVQMPS

KAG6573282.1 hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia]7.3e-2252.63Show/hide
Query:  SSYSFKSLSFSGYLTSKDRQPVTTVSEEKIKTRDR------------GSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEE
        SS S  SLSFSG++TSKDRQP     ++ I+T D+            G +  V+P+P+ +Q+QV C+  +   +    L+VRNHSIRR GRRIR+ EEEE
Subjt:  SSYSFKSLSFSGYLTSKDRQPVTTVSEEKIKTRDR------------GSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEE

Query:  PSRSGWSVLRSFVSPCRQCRASKPAVIEPRSVQ
         + SGWSV RSFVSPCR+CRASKPAV+E R VQ
Subjt:  PSRSGWSVLRSFVSPCRQCRASKPAVIEPRSVQ

KGN64696.1 hypothetical protein Csa_013090 [Cucumis sativus]1.5e-1142.74Show/hide
Query:  SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSF
        SLSFSGYL SKDR   +  S    + KIK  D G E S             C G   +  GER    +VRN+SI+R  ++I + E++E   SGW +   F
Subjt:  SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSF

Query:  VSPCRQCRASKPAVIEPRSVQMPS
        V PCR+CRA KP+V++PR +Q+PS
Subjt:  VSPCRQCRASKPAVIEPRSVQMPS

XP_022139818.1 uncharacterized protein LOC111010640 [Momordica charantia]4.4e-1955.74Show/hide
Query:  SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLR
        SSYSF  SLSF+ YLT KDR+P    S   IKT D+G E   I            R  + + DG+RWLVVRN+SIRR GRRI+D EEE  S + W SV R
Subjt:  SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLR

Query:  SFVSPCRQCRASKP-AVIEPRS
        SFVSPCR+CRASKP AVIE ++
Subjt:  SFVSPCRQCRASKP-AVIEPRS

TrEMBL top hitse value%identityAlignment
A0A0A0LXF9 Uncharacterized protein7.3e-1242.74Show/hide
Query:  SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSF
        SLSFSGYL SKDR   +  S    + KIK  D G E S             C G   +  GER    +VRN+SI+R  ++I + E++E   SGW +   F
Subjt:  SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSF

Query:  VSPCRQCRASKPAVIEPRSVQMPS
        V PCR+CRA KP+V++PR +Q+PS
Subjt:  VSPCRQCRASKPAVIEPRSVQMPS

A0A5D3DS79 Uncharacterized protein2.3e-1345.83Show/hide
Query:  SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW--LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPC
        SLSFSGYL SKDR+  +  S   I+T+DR  ++ V+          C    V +  GER    +VRN+SIRR  ++IR+ +EE    S W V+ SFV PC
Subjt:  SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW--LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPC

Query:  RQCRASKPAVIEPRSVQMPS
        R+CRASKP V++PR +Q PS
Subjt:  RQCRASKPAVIEPRSVQMPS

A0A6J1CGL7 uncharacterized protein LOC1110106402.1e-1955.74Show/hide
Query:  SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLR
        SSYSF  SLSF+ YLT KDR+P    S   IKT D+G E   I            R  + + DG+RWLVVRN+SIRR GRRI+D EEE  S + W SV R
Subjt:  SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLR

Query:  SFVSPCRQCRASKP-AVIEPRS
        SFVSPCR+CRASKP AVIE ++
Subjt:  SFVSPCRQCRASKP-AVIEPRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCTACTCTTTCAAATCTCTCTCGTTTTCTGGCTACTTAACTTCAAAAGATAGGCAGCCAGTTACGACAGTATCCGAGGAGAAGATCAAAACGCGAGACCGAGG
ATCCGAGGTTTCGGTTATACCGAAGCCGAAGCGGAAACAGTCCCAAGTTTGTTGTAGGGGGGGAGTTGGTAATATTGATGGAGAGAGATGGTTGGTTGTGAGAAACCACA
GTATCAGAAGAGATGGTCGAAGGATAAGGGATGGGGAAGAAGAAGAACCGTCCCGGTCTGGGTGGAGTGTTCTCCGGTCCTTTGTTTCGCCGTGTAGGCAGTGCCGAGCT
AGCAAGCCTGCTGTTATTGAACCGCGTTCGGTTCAAATGCCTTCATATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGCTACTCTTTCAAATCTCTCTCGTTTTCTGGCTACTTAACTTCAAAAGATAGGCAGCCAGTTACGACAGTATCCGAGGAGAAGATCAAAACGCGAGACCGAGG
ATCCGAGGTTTCGGTTATACCGAAGCCGAAGCGGAAACAGTCCCAAGTTTGTTGTAGGGGGGGAGTTGGTAATATTGATGGAGAGAGATGGTTGGTTGTGAGAAACCACA
GTATCAGAAGAGATGGTCGAAGGATAAGGGATGGGGAAGAAGAAGAACCGTCCCGGTCTGGGTGGAGTGTTCTCCGGTCCTTTGTTTCGCCGTGTAGGCAGTGCCGAGCT
AGCAAGCCTGCTGTTATTGAACCGCGTTCGGTTCAAATGCCTTCATATTCTTGA
Protein sequenceShow/hide protein sequence
MSSYSFKSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRA
SKPAVIEPRSVQMPSYS