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Sed0004554 (gene) of Chayote v1 genome

Gene IDSed0004554
OrganismSechium edule (Chayote v1)
DescriptionHTH myb-type domain-containing protein
Genome locationLG01:1312582..1313897
RNA-Seq ExpressionSed0004554
SyntenySed0004554
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604776.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

KAG7034901.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

XP_022947230.1 uncharacterized protein LOC111451155 [Cucurbita moschata]2.7e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

XP_022970836.1 two-component response regulator ARR10-like [Cucurbita maxima]2.7e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

XP_023533211.1 uncharacterized protein LOC111795167 [Cucurbita pepo subsp. pepo]2.7e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KBB2 HTH myb-type domain-containing protein2.4e-3670.63Show/hide
Query:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN
        MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMN
Subjt:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN

Query:  VRGLSISHVKSHLQMYRSKKLDESGQ
        VRGLSI+HVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSISHVKSHLQMYRSKKLDESGQ

A0A1S3BJ91 probable transcription factor KAN2 isoform X24.0e-3670.63Show/hide
Query:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN
        MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMN
Subjt:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN

Query:  VRGLSISHVKSHLQMYRSKKLDESGQ
        VRGLSI+HVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSISHVKSHLQMYRSKKLDESGQ

A0A1S3BK41 uncharacterized protein LOC103490495 isoform X14.0e-3670.63Show/hide
Query:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN
        MINGFDLNEEA  ++E         +++SSNNGS EE ++E            G VRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMN
Subjt:  MINGFDLNEEAITVEE--------ENSSSSNNGSNEEKDQER----------IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMN

Query:  VRGLSISHVKSHLQMYRSKKLDESGQ
        VRGLSI+HVKSHLQMYRSKKLDESGQ
Subjt:  VRGLSISHVKSHLQMYRSKKLDESGQ

A0A6J1G6A3 uncharacterized protein LOC1114511551.3e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

A0A6J1I531 two-component response regulator ARR10-like1.3e-4284.96Show/hide
Query:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL
        MMINGFDLNEEA  ++EEN SSSNNGS     EE+DQ R GGVRKYSRSKMPRLRWTPDLH +FVNAV+RLGGQERATPKLVLQLMNVRGLSI+HVKSHL
Subjt:  MMINGFDLNEEAITVEEENSSSSNNGS----NEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHL

Query:  QMYRSKKLDESGQ
        QMYRSKKLDESGQ
Subjt:  QMYRSKKLDESGQ

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH18.7e-2067.19Show/hide
Query:  GVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRS
        GVR+Y+RS++PR+RWT ++H  FV AV+ LGGQ+ ATPK +LQLM V+G+SISH+KSHLQMYRS
Subjt:  GVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRS

A3AWH5 Myb family transcription factor MOF19.9e-2467.53Show/hide
Query:  RIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQGR
        R G VR+Y RSK+PRLRWT +LH SFV A++ LGGQ++ATPKL+LQLM V+GL+ISHVKSHLQMYR  +L   G GR
Subjt:  RIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQGR

Q0J235 Probable transcription factor RL96.5e-1563.79Show/hide
Query:  KMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK
        + PR+RWT  LH  FV+AV+ LGG ERATPK VL+LM+V+ L+++HVKSHLQMYR+ K
Subjt:  KMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKK

Q700D9 Putative Myb family transcription factor At1g146002.4e-2267.57Show/hide
Query:  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ
        IGGVR Y RS +PRLRWTP+LH SFV+AV  LGGQ +ATPKLVL++M+V+GL+ISHVKSHLQMYR  ++   G+
Subjt:  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ

Q9FJV5 Probable transcription factor KAN43.4e-1651.81Show/hide
Query:  GSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESG
        G + ++    + G+++  R+  PR+RWT  LH  FV+AVQ LGG ERATPK VL+LMNV+ L+++HVKSHLQMYR+ K  + G
Subjt:  GSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESG

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein1.7e-2367.57Show/hide
Query:  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ
        IGGVR Y RS +PRLRWTP+LH SFV+AV  LGGQ +ATPKLVL++M+V+GL+ISHVKSHLQMYR  ++   G+
Subjt:  IGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ

AT2G02060.1 Homeodomain-like superfamily protein2.5e-2254.46Show/hide
Query:  SSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRS------KKLDESGQGRVFNQ
        SS    N   +  +  GVR Y RS +PRLRWTPDLH  FV+AV+ LGGQ RATPKLVL++M+V+GL+ISHVKSHLQMYR       +K +ES    +  +
Subjt:  SSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRS------KKLDESGQGRVFNQ

Query:  Q
        Q
Subjt:  Q

AT2G38300.1 myb-like HTH transcriptional regulator family protein2.8e-2966Show/hide
Query:  EEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ
        EE    E E S  S+N + EE D++    VR Y RSK+PRLRWTPDLH  FV AV+RLGGQERATPKLV Q+MN++GLSI+HVKSHLQMYRSKK+D+ GQ
Subjt:  EEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQ

AT2G40260.1 Homeodomain-like superfamily protein1.5e-2757.14Show/hide
Query:  NEEAITVEEENSSSSNNGSN----------EEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQM
        +EE    EEE S   +  SN           +++++  G VR Y+RSK PRLRWTP+LH  F+ AV+RLGG +RATPKLVLQLMNV+GLSI+HVKSHLQM
Subjt:  NEEAITVEEENSSSSNNGSN----------EEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQM

Query:  YRSKKLDESGQG
        YRSKK DE  +G
Subjt:  YRSKKLDESGQG

AT2G42660.1 Homeodomain-like superfamily protein3.1e-2866.02Show/hide
Query:  DLNEEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDE
        DLN E  TVE+ N   S   S E++DQ     VR+Y RS MPRLRWTPDLH SFV AVQRLGG +RATPKLVL++MN++GLSI+HVKSHLQMYRSKKL+ 
Subjt:  DLNEEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDE

Query:  SGQ
        S +
Subjt:  SGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTAATGGGTTTGATTTGAACGAAGAAGCCATAACCGTCGAAGAAGAAAACTCGAGCAGCAGCAACAATGGAAGCAATGAGGAGAAAGATCAAGAAAGAATTGG
GGGAGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCCGATCTTCATTTTTCCTTTGTAAATGCTGTTCAAAGACTCGGCGGACAAGAAAGGGCAA
CTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGGCTAAGCATTTCCCATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGGT
AGGGTTTTTAATCAACAAAGCTGGATTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATTAATGGGTTTGATTTGAACGAAGAAGCCATAACCGTCGAAGAAGAAAACTCGAGCAGCAGCAACAATGGAAGCAATGAGGAGAAAGATCAAGAAAGAATTGG
GGGAGTTAGAAAATATTCAAGATCCAAAATGCCAAGGCTTCGTTGGACTCCCGATCTTCATTTTTCCTTTGTAAATGCTGTTCAAAGACTCGGCGGACAAGAAAGGGCAA
CTCCAAAGTTGGTACTTCAGTTGATGAATGTAAGAGGGCTAAGCATTTCCCATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGGT
AGGGTTTTTAATCAACAAAGCTGGATTCTCTAG
Protein sequenceShow/hide protein sequence
MMINGFDLNEEAITVEEENSSSSNNGSNEEKDQERIGGVRKYSRSKMPRLRWTPDLHFSFVNAVQRLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRSKKLDESGQG
RVFNQQSWIL