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Sed0004555 (gene) of Chayote v1 genome

Gene IDSed0004555
OrganismSechium edule (Chayote v1)
DescriptionPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Genome locationLG13:3987188..3988785
RNA-Seq ExpressionSed0004555
SyntenySed0004555
Gene Ontology termsGO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025435.1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa]1.5e-6969.16Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDP FSALN+PE+FPIE+RRRSEI R+R+P+ ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEIN+EKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

XP_004152910.2 uncharacterized protein LOC101210146 [Cucumis sativus]1.5e-6969.16Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDPNF ALN+PE+FPIE+RRRS+I R+R+PS ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEI+VEKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

XP_008452345.1 PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]3.0e-7069.63Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDPNFSALN+PE+FPIE+RRRSEI R+R+P+ ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEIN+EKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

XP_022932131.1 uncharacterized protein LOC111438454 [Cucurbita moschata]3.3e-6971.3Show/hide
Query:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI
        MA  HLH       L++     P FT  NP        + LKCSSE  E DPNFPSP+P+F ALN+PESFPIE+RRRSEI R+RRPSKD+VK EPPNFEI
Subjt:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI

Query:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA
        GWKRTKEIN+EKPVGW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEIL +D KV+DR VTELFRVLKLMEMDL M+  AVKDET + RLA
Subjt:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA

Query:  NAKARCRQAILVASSF
         AKARCRQAILVA+SF
Subjt:  NAKARCRQAILVASSF

XP_022985263.1 uncharacterized protein LOC111483306 [Cucurbita maxima]2.5e-6970.83Show/hide
Query:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI
        MA  HLH       L++     P FT  NP        + LKCSSE  E DPNFPSPDP+F ALN+PESFP+E+RRRSEI R+RRPSK++VK EPPNFEI
Subjt:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI

Query:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA
        GWKRTKEIN+EKPVGW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEIL +D KV+DR VTELFRVLKLMEMDL M+  AV+DET T RLA
Subjt:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA

Query:  NAKARCRQAILVASSF
         AKARCRQAILVA+SF
Subjt:  NAKARCRQAILVASSF

TrEMBL top hitse value%identityAlignment
A0A0A0L6D8 Uncharacterized protein7.2e-7069.16Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDPNF ALN+PE+FPIE+RRRS+I R+R+PS ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEI+VEKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

A0A1S3BT06 uncharacterized protein LOC1034934031.4e-7069.63Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDPNFSALN+PE+FPIE+RRRSEI R+R+P+ ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEIN+EKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

A0A5D3C0F1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 17.2e-7069.16Show/hide
Query:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW
        MASSHLHFL      ++    HP+FT       KR+ SI       E DPNFPSPDP FSALN+PE+FPIE+RRRSEI R+R+P+ ++ K EPPNFEIGW
Subjt:  MASSHLHFL------IVCQSHHPNFT-------KRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGW

Query:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA
        KRTKEIN+EKP+GW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEILR+D KV++R VTELFRVLKLMEMDL M+  AVKDET + RL  A
Subjt:  KRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANA

Query:  KARCRQAILVASSF
        KARCRQAILVA+SF
Subjt:  KARCRQAILVASSF

A0A6J1EVI2 uncharacterized protein LOC1114384541.6e-6971.3Show/hide
Query:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI
        MA  HLH       L++     P FT  NP        + LKCSSE  E DPNFPSP+P+F ALN+PESFPIE+RRRSEI R+RRPSKD+VK EPPNFEI
Subjt:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI

Query:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA
        GWKRTKEIN+EKPVGW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEIL +D KV+DR VTELFRVLKLMEMDL M+  AVKDET + RLA
Subjt:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA

Query:  NAKARCRQAILVASSF
         AKARCRQAILVA+SF
Subjt:  NAKARCRQAILVASSF

A0A6J1JD53 uncharacterized protein LOC1114833061.2e-6970.83Show/hide
Query:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI
        MA  HLH       L++     P FT  NP        + LKCSSE  E DPNFPSPDP+F ALN+PESFP+E+RRRSEI R+RRPSK++VK EPPNFEI
Subjt:  MASSHLHF------LIVCQSHHPNFTKRNP-------SIMLKCSSE--EWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEI

Query:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA
        GWKRTKEIN+EKPVGW IMDFL KLE LMERE FGS ELL KVGEIVAERAREEAEIL +D KV+DR VTELFRVLKLMEMDL M+  AV+DET T RLA
Subjt:  GWKRTKEINVEKPVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLA

Query:  NAKARCRQAILVASSF
         AKARCRQAILVA+SF
Subjt:  NAKARCRQAILVASSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G51100.1 unknown protein1.0e-5257.84Show/hide
Query:  MASSHLHFLIVCQSHHPNFTKRNPSIMLKCSSE-EWDPNFPSPDPNFSALN--KPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGWKRTKEINVEK
        ++S +LH  +  +++  +F +R      KCSS  E    F +  P   ++N    E FPIE+RRRSEI R+ R  + + K EPPNFEIGWKRTKEIN+EK
Subjt:  MASSHLHFLIVCQSHHPNFTKRNPSIMLKCSSE-EWDPNFPSPDPNFSALN--KPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGWKRTKEINVEK

Query:  PVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANAKARCRQAILV
        P G+ IMDFL K E LM RE FGS ELL K GEIVAERAREEAE+LR++ KV++R VTELFRVLKLMEMDL M+  +VKDET + R+  A+ARCRQAILV
Subjt:  PVGWAIMDFLGKLETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANAKARCRQAILV

Query:  ASSF
        A+SF
Subjt:  ASSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCCACCTCCATTTCCTGATTGTGTGCCAATCTCATCACCCCAATTTCACAAAGCGAAACCCATCAATAATGCTGAAATGCAGCTCAGAAGAATGGGACCC
GAATTTCCCATCCCCCGATCCGAATTTCAGCGCCCTAAACAAACCAGAGAGCTTCCCAATAGAGAGGCGGAGAAGATCCGAAATAGCCCGAGAAAGAAGACCGAGCAAGG
ACATGGTAAAGGGGGAGCCGCCGAACTTTGAAATCGGGTGGAAGAGGACGAAGGAGATAAATGTGGAGAAGCCGGTAGGGTGGGCGATCATGGACTTTCTGGGGAAGCTT
GAAACGCTGATGGAGAGGGAGCAGTTCGGGTCGGCAGAGCTGTTGGGGAAAGTGGGAGAGATCGTGGCGGAGAGGGCGAGAGAGGAGGCCGAGATCTTGCGCGAGGATGC
TAAAGTAGACGATAGAAAGGTTACAGAGTTGTTTAGAGTTTTGAAGCTCATGGAGATGGATTTGCAAATGCTCAATGTTGCTGTCAAGGACGAAACTTTCACTAACCGCC
TTGCCAATGCCAAAGCTAGGTGCCGCCAGGCTATACTTGTTGCTTCTTCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAAAGGGTTTTAGGGTTATCGGGAAAAGGGGTAGAAGATAGGGTACGAGTGATTAGAAAAAGGAAAAGTGGCGAAAAGAGGCGATTTCTTGGTGGATTGTGTGAATT
TAAGAGAGATTGAAGCCATATATCAGAGGAATGGTGATTAAAAGCAGGGGTGTTACATCTTTGCCCATTATAAAATTGGATGAGAAATAAGATATAAGAAAGAGGAGAGA
GGCATCCAAACATGCCAAGGTATAAGCTTATGTACTCTGCTTTCCCTTGGTGTTGCAGGCAGGCATGGCTTCCTCCCACCTCCATTTCCTGATTGTGTGCCAATCTCATC
ACCCCAATTTCACAAAGCGAAACCCATCAATAATGCTGAAATGCAGCTCAGAAGAATGGGACCCGAATTTCCCATCCCCCGATCCGAATTTCAGCGCCCTAAACAAACCA
GAGAGCTTCCCAATAGAGAGGCGGAGAAGATCCGAAATAGCCCGAGAAAGAAGACCGAGCAAGGACATGGTAAAGGGGGAGCCGCCGAACTTTGAAATCGGGTGGAAGAG
GACGAAGGAGATAAATGTGGAGAAGCCGGTAGGGTGGGCGATCATGGACTTTCTGGGGAAGCTTGAAACGCTGATGGAGAGGGAGCAGTTCGGGTCGGCAGAGCTGTTGG
GGAAAGTGGGAGAGATCGTGGCGGAGAGGGCGAGAGAGGAGGCCGAGATCTTGCGCGAGGATGCTAAAGTAGACGATAGAAAGGTTACAGAGTTGTTTAGAGTTTTGAAG
CTCATGGAGATGGATTTGCAAATGCTCAATGTTGCTGTCAAGGACGAAACTTTCACTAACCGCCTTGCCAATGCCAAAGCTAGGTGCCGCCAGGCTATACTTGTTGCTTC
TTCTTTCTGATTTACGATCAACTTCTTGATGCATGCCATTACATTGGAATTGTCAAAATTAGTTTAAATCTGTTTATAATTTTAACTCATGTAAATCTAACATGGCAATG
AAATTACGTTTCTAAGCTCAAAAGCCACTTGCAATTTGGAGCATCTAAG
Protein sequenceShow/hide protein sequence
MASSHLHFLIVCQSHHPNFTKRNPSIMLKCSSEEWDPNFPSPDPNFSALNKPESFPIERRRRSEIARERRPSKDMVKGEPPNFEIGWKRTKEINVEKPVGWAIMDFLGKL
ETLMEREQFGSAELLGKVGEIVAERAREEAEILREDAKVDDRKVTELFRVLKLMEMDLQMLNVAVKDETFTNRLANAKARCRQAILVASSF