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Sed0004563 (gene) of Chayote v1 genome

Gene IDSed0004563
OrganismSechium edule (Chayote v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationLG05:2565704..2567533
RNA-Seq ExpressionSed0004563
SyntenySed0004563
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026077.1 uncharacterized protein E6C27_scaffold19G00070 [Cucumis melo var. makuwa]3.3e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
XP_004149319.1 uncharacterized protein LOC101213309 isoform X1 [Cucumis sativus]3.3e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
XP_008458090.1 PREDICTED: uncharacterized protein LOC103497626 [Cucumis melo]3.3e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
XP_031744424.1 uncharacterized protein LOC101213309 isoform X2 [Cucumis sativus]3.3e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
XP_038887684.1 uncharacterized protein LOC120077754 isoform X2 [Benincasa hispida]3.3e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
TrEMBL top hitse value%identityAlignment
A0A0A0K6W8 WD_REPEATS_REGION domain-containing protein1.6e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
A0A1S3C759 uncharacterized protein LOC1034976261.6e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
A0A5A7SMW9 WD_REPEATS_REGION domain-containing protein1.6e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQGI+KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
A0A6J1H7H6 uncharacterized protein LOC1114607853.6e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+N  +DLNDILS   LTTK++DI+ETFQGI KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
A0A6J1KYT4 uncharacterized protein LOC1114976123.6e-2272.62Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQGNDLKR L CLL + NSR MGQ+N  +DLNDILS   LTTK++DI+ETFQGI KF+++FLDLIDAAD TGQADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24710.1 Transducin/WD40 repeat-like superfamily protein1.9e-2059.52Show/hide
Query:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA
        RL+FDL MQ NDLKR L CLL + NS+ +GQ+   +DL+DILSL+   TK++D++E  +GI+KF+++FLDLIDAAD TG ADIA
Subjt:  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGGAAGGGAGAGAAAAGATGGTGTTCTCTCGCTAATTGACAGATTGAAATTTGATCTAATCATGCAAGGAAATGATTTAAAAAGAGGACTTTTGTGTCTCTTAAA
ATTAAACAGCAGGACCATGGGGCAAAATAATGCTGACATTGATTTAAATGACATCCTCAGCTTAAGCTGCTTAACAACTAAAAGGAAAGATATAATGGAAACATTTCAAG
GAATTATGAAATTTTCGGAAGATTTTTTGGATTTGATTGATGCGGCGGATATTACTGGACAAGCGGATATTGCCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACGGAAGGGAGAGAAAAGATGGTGTTCTCTCGCTAATTGACAGATTGAAATTTGATCTAATCATGCAAGGAAATGATTTAAAAAGAGGACTTTTGTGTCTCTTAAA
ATTAAACAGCAGGACCATGGGGCAAAATAATGCTGACATTGATTTAAATGACATCCTCAGCTTAAGCTGCTTAACAACTAAAAGGAAAGATATAATGGAAACATTTCAAG
GAATTATGAAATTTTCGGAAGATTTTTTGGATTTGATTGATGCGGCGGATATTACTGGACAAGCGGATATTGCCCTCTAA
Protein sequenceShow/hide protein sequence
MHGRERKDGVLSLIDRLKFDLIMQGNDLKRGLLCLLKLNSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIAL