CuGenDBv2

Gene ID	Sed0004594
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein L34
Genome location	LG06:45963503..45964935
RNA-Seq Expression	Sed0004594
Synteny	Sed0004594
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

KAG7018271.1 hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

XP_004141160.2 uncharacterized protein LOC101210601 [Cucumis sativus]

2.7e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTG+ L+NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQT H LQ ND ESLR+LQSE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

XP_022955351.1 uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]

6.1e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

XP_038904887.1 uncharacterized protein LOC120091114 isoform X1 [Benincasa hispida]

6.1e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN LINRLR S THQ+HRI + Q+L +GHG E TPMLFPS+S+ QT H LQ ND ESLRKL+ E IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIB6 Uncharacterized protein

1.3e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTG+ L+NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQT H LQ ND ESLR+LQSE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

A0A1S3BHV7 uncharacterized protein LOC103490028

5.0e-28

72.53

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN  +NRLR S  HQN+RI   Q+L HGHG E TPMLFPS+S+HQ  H LQ ND ESLR+LQSE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

A0A6J1GTJ1 uncharacterized protein LOC111457406 isoform X1

2.9e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

2.9e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MASKLL+RTGN L+NRLR S THQN+ I + QSL  GHG + TPMLFPS+S+HQT H LQ ND ESLRKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

A0A6J1KF33 uncharacterized protein LOC111492674

3.8e-28

73.63

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Query:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG
        MAS LL+RTGN LINRLR + THQ  RI  PQ+L HGHGAE TPMLFPSLS+HQT   LQ ND E++RKL+SE IFFPFGLPSL FFLPDG
Subjt:  MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

4.4e-08

36.96

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Query:  MASKLLLRTGNPLINRLRSSLTHQ--NHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPD
        MA+K L+R+G  L+NR  +  T     + + +    +   G E  P  FPSLS  Q+    + ND  SL++L      +P GLPSL FFLP+
Subjt:  MASKLLLRTGNPLINRLRSSLTHQ--NHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPD

AT3G13882.2 Ribosomal protein L34

1.4e-06

41.25

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Query:  NPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPD
        NP  N LRSS  +     + PQ      G E  P  FPSLS  Q+    + ND  SL++L      +P GLPSL FFLP+
Subjt:  NPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPD

Sequences

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CDS sequence

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ATGGCGTCCAAACTTCTGCTTCGAACGGGAAATCCTTTGATCAATCGTTTGCGATCAAGTTTAACGCATCAGAATCACAGGATTTTGAATCCCCAATCTCTGCTCCATGG
CCATGGCGCTGAAGCCACTCCGATGCTATTTCCTTCACTCTCTCAGCACCAGACTGGTCACCAATTGCAGATGAATGACGCCGAATCGTTGAGGAAGCTTCAATCGGAAG
AAATCTTCTTCCCCTTTGGTCTTCCGTCGCTGCCGTTCTTCTTGCCCGACGGTTTCTTGTATGTACCATGGGAAGATGCCTTCGAGTGCCATGGCGGCGTGGTGCCTAAA
TTTCAAATTAGGAATGGAAGTTGCACCTACATTATTATTATGAAGCTTTATATTCATATATTGAACTTAGTTTTTCAAGGGGCATGGTGCCCCAAGGGTTTGTGGAAGTG
GTATTGTTAA

mRNA sequence

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GCCTCTTCTGATCATCTCTCTAGGGTTTAGTGAGCTCGCTCATTCGAAAATGGCGTCCAAACTTCTGCTTCGAACGGGAAATCCTTTGATCAATCGTTTGCGATCAAGTT
TAACGCATCAGAATCACAGGATTTTGAATCCCCAATCTCTGCTCCATGGCCATGGCGCTGAAGCCACTCCGATGCTATTTCCTTCACTCTCTCAGCACCAGACTGGTCAC
CAATTGCAGATGAATGACGCCGAATCGTTGAGGAAGCTTCAATCGGAAGAAATCTTCTTCCCCTTTGGTCTTCCGTCGCTGCCGTTCTTCTTGCCCGACGGTTTCTTGTA
TGTACCATGGGAAGATGCCTTCGAGTGCCATGGCGGCGTGGTGCCTAAATTTCAAATTAGGAATGGAAGTTGCACCTACATTATTATTATGAAGCTTTATATTCATATAT
TGAACTTAGTTTTTCAAGGGGCATGGTGCCCCAAGGGTTTGTGGAAGTGGTATTGTTAAGTGTTTCTTCATGCCTAAACATTTTGCCTCCCTAGTCCCTCGTAACCAAGA
AAAAACTTAGGGTGCCAAGCCAAACCTATCAGCCACTCAAGCTTCAGGGATGACTTTGAGATTAGTCTTGAGAACGCTGTTGGCAATGAAGATACTCTTCTTTCAGCATC
TACCTTCCGTTGTAAATTTGTAATAATGTAAGGGTTGTCTATGTCTATCTACTTATTCCATACGAAACTATTTTTTTCATGTAAGAAACAATTTCATTGATGCACAAAAT
TGAAAAAAAATGGCACAATGTCCTTGAGAAGCA

Protein sequence

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MASKLLLRTGNPLINRLRSSLTHQNHRILNPQSLLHGHGAEATPMLFPSLSQHQTGHQLQMNDAESLRKLQSEEIFFPFGLPSLPFFLPDGFLYVPWEDAFECHGGVVPK
FQIRNGSCTYIIIMKLYIHILNLVFQGAWCPKGLWKWYC

Sed0004594 (gene) of Chayote v1 genome