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Sed0004659 (gene) of Chayote v1 genome

Gene IDSed0004659
OrganismSechium edule (Chayote v1)
DescriptionValyl-tRNA synthetase
Genome locationLG05:3836884..3839163
RNA-Seq ExpressionSed0004659
SyntenySed0004659
Gene Ontology termsGO:0006438 - valyl-tRNA aminoacylation (biological process)
GO:0004832 - valine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002300 - Aminoacyl-tRNA synthetase, class Ia
IPR002303 - Valine-tRNA ligase
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605705.1 Valine--tRNA ligase, mitochondrial 1, partial [Cucurbita argyrosperma subsp. sororia]5.6e-3560.56Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FK REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + E +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

KAG7035615.1 Valine--tRNA ligase, mitochondrial 1 [Cucurbita argyrosperma subsp. argyrosperma]5.6e-3560.56Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FK REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + E +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

TYK00287.1 valine--tRNA ligase [Cucumis melo var. makuwa]5.6e-3561.27Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FKAREMVVDALQKK LYRGAK NEMRL L                   C    ++ LD  A DNE   + + +         RWL+NI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATLE DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

XP_008467213.1 PREDICTED: valine--tRNA ligase, mitochondrial 1 [Cucumis melo]5.6e-3561.27Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FKAREMVVDALQKK LYRGAK NEMRL L                   C    ++ LD  A DNE   + + +         RWL+NI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATLE DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

XP_023533939.1 valine--tRNA ligase, mitochondrial 1 [Cucurbita pepo subsp. pepo]5.6e-3560.56Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FK REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + E +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

TrEMBL top hitse value%identityAlignment
A0A1S3CT04 Valyl-tRNA synthetase2.7e-3561.27Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FKAREMVVDALQKK LYRGAK NEMRL L                   C    ++ LD  A DNE   + + +         RWL+NI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATLE DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

A0A5D3BM83 Valyl-tRNA synthetase2.7e-3561.27Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FKAREMVVDALQKK LYRGAK NEMRL L                   C    ++ LD  A DNE   + + +         RWL+NI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATLE DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

A0A6J1H1R1 Valyl-tRNA synthetase7.9e-3559.86Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP F+ REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + E +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

A0A6J1H3K8 Valyl-tRNA synthetase7.9e-3559.86Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP F+ REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + E +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

A0A6J1JYM1 Valyl-tRNA synthetase7.9e-3559.86Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP FK REMVVDALQKK LYRGAK NEMRL L                   C  + ++ LD    DNE   + + +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        WWGHRIPA YATL+ DQLKEFGAYNDHWVVARNEEEAE+EAK
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

SwissProt top hitse value%identityAlignment
O75005 Valine--tRNA ligase2.8e-1335.04Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRL--------VLECLS-----LNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQLWWGHR
        M  F AR  VV+ L++  L+ G K N M +        ++E +      +N++ +   A +      +E      R    RW+ENI DWCISRQLWWGHR
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRL--------VLECLS-----LNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQLWWGHR

Query:  IPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK
        IPA +  L  D+  +  +   +WV  R  E+AE++AK
Subjt:  IPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEAK

P07806 Valine--tRNA ligase, mitochondrial7.4e-1433.82Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRL--------VLECLSLNRRGLDRGAKDNEMHLV-----LECLSLNRRIVCYRWLENICDWCISRQLWWGHR
        M  F AR+ V++ L++K LY G + NEM +        ++E L   +  + +     +   V     +     +     + WL NI DWCISRQLWWGHR
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRL--------VLECLSLNRRGLDRGAKDNEMHLV-----LECLSLNRRIVCYRWLENICDWCISRQLWWGHR

Query:  IPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
         P  +  +EG++        D+WV  R+ EEAEK+A
Subjt:  IPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA

P93736 Valine--tRNA ligase, mitochondrial 13.5e-3253.9Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP F ARE VV+ALQK+ LYRGAK NEMRL L                   C  + +  LD    D      LE +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
        WWGHRIPA YATLE DQLKE GAY+DHWVVAR E++A +EA
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA

Q86KU2 Probable valine--tRNA ligase, cytoplasmic4.2e-1735.46Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        M  F AR  VV+AL++K L++G K N+MRL L                  +C  +  R + +  +D ++ +  +       +  YRWLE I DWC+SRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
        WWGHRIPA +  ++G +   +    + WVV  N+EEA + A
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA

Q9U1Q4 Valine--tRNA ligase4.8e-1333.33Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEM------------------RLVLECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        M  F AR  V++AL++K LYRG + N M                  +  ++C  +  + +   A  +     L+ +    +    RWLE+  DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEM------------------RLVLECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
        WWGHRIPA Y +    + +     N +WV AR E+EA  +A
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA

Arabidopsis top hitse value%identityAlignment
AT1G14610.1 valyl-tRNA synthetase / valine--tRNA ligase (VALRS)2.5e-3353.9Show/hide
Query:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL
        MP F ARE VV+ALQK+ LYRGAK NEMRL L                   C  + +  LD    D      LE +         RWLENI DWCISRQL
Subjt:  MPHFKAREMVVDALQKKALYRGAKYNEMRLVL------------------ECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQL

Query:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
        WWGHRIPA YATLE DQLKE GAY+DHWVVAR E++A +EA
Subjt:  WWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA

AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases2.8e-0850.91Show/hide
Query:  WLENICDWCISRQLWWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA
        WL NI DWCISRQLWWGHRIP  Y    G   +E       ++VA++ EEA ++A
Subjt:  WLENICDWCISRQLWWGHRIPARYATLEGDQLKEFGAYNDHWVVARNEEEAEKEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACATTTTAAAGCTCGGGAAATGGTAGTCGACGCCTTGCAGAAGAAGGCTCTTTATAGAGGTGCTAAATACAATGAGATGCGTCTTGTCCTAGAGTGCCTTTCCCT
GAATAGAAGGGGTCTTGATAGAGGTGCTAAAGACAATGAGATGCATCTTGTCCTGGAGTGCCTTTCCCTGAATAGAAGGATTGTTTGCTACCGGTGGCTAGAGAACATTT
GTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCACAGAATTCCTGCAAGGTATGCTACATTAGAGGGTGATCAACTAAAGGAGTTTGGTGCATATAATGATCACTGG
GTGGTTGCAAGAAATGAGGAAGAGGCTGAGAAGGAGGCCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACATTTTAAAGCTCGGGAAATGGTAGTCGACGCCTTGCAGAAGAAGGCTCTTTATAGAGGTGCTAAATACAATGAGATGCGTCTTGTCCTAGAGTGCCTTTCCCT
GAATAGAAGGGGTCTTGATAGAGGTGCTAAAGACAATGAGATGCATCTTGTCCTGGAGTGCCTTTCCCTGAATAGAAGGATTGTTTGCTACCGGTGGCTAGAGAACATTT
GTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCACAGAATTCCTGCAAGGTATGCTACATTAGAGGGTGATCAACTAAAGGAGTTTGGTGCATATAATGATCACTGG
GTGGTTGCAAGAAATGAGGAAGAGGCTGAGAAGGAGGCCAAATAA
Protein sequenceShow/hide protein sequence
MPHFKAREMVVDALQKKALYRGAKYNEMRLVLECLSLNRRGLDRGAKDNEMHLVLECLSLNRRIVCYRWLENICDWCISRQLWWGHRIPARYATLEGDQLKEFGAYNDHW
VVARNEEEAEKEAK