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Sed0004662 (gene) of Chayote v1 genome

Gene IDSed0004662
OrganismSechium edule (Chayote v1)
DescriptionElongin-C
Genome locationLG01:8404480..8406764
RNA-Seq ExpressionSed0004662
SyntenySed0004662
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR039948 - Elongin-C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]6.1e-4593.88Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKEDTVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]1.8e-4492.86Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKE+TVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

XP_022948640.1 elongin-C-like [Cucurbita moschata]3.1e-4492.86Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKEDTVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEIST ILEKICQYFYW+LQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]2.1e-4594.9Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKE+TVKLISAEGFEFLIH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFYWNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]4.7e-4593.88Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKE+TVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFYWNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

TrEMBL top hitse value%identityAlignment
A0A0A0LY44 Elongin-C3.0e-4593.88Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKEDTVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

A0A1S3C6T3 Elongin-C3.0e-4593.88Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKEDTVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

A0A6J1DWE1 Elongin-C8.7e-4592.86Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKE+TVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

A0A6J1HJP6 Elongin-C1.0e-4594.9Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKE+TVKLISAEGFEFLIH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFYWNLQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

A0A6J1KFM7 Elongin-C1.5e-4492.86Show/hide
Query:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        MKKEDTVKLISAEGFEF+IH DAAMVSQTIRNMLTSPGNFAES+HREVTFPEIST ILEKICQYFYW+LQFA GKETEFPIEPELTLEL MAANYLHT
Subjt:  MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT

SwissProt top hitse value%identityAlignment
P83940 Elongin-C1.5e-1746.74Show/hide
Query:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL
        VKLIS++G EF++  + A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++        EFPI PE+ LEL MAAN+L
Subjt:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL

P83941 Elongin-C1.5e-1746.74Show/hide
Query:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL
        VKLIS++G EF++  + A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++        EFPI PE+ LEL MAAN+L
Subjt:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL

Q15369 Elongin-C1.5e-1746.74Show/hide
Query:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL
        VKLIS++G EF++  + A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++        EFPI PE+ LEL MAAN+L
Subjt:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL

Q2KII4 Elongin-C1.5e-1746.74Show/hide
Query:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL
        VKLIS++G EF++  + A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++        EFPI PE+ LEL MAAN+L
Subjt:  VKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE--TEFPIEPELTLELTMAANYL

Q9USX9 Elongin-C5.8e-1440Show/hide
Query:  KEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE-TEFPIEPELTLELTMAANYL
        +++ V+LIS +GF F++  + A +S TIR +L + G F+E++  E TFP+I  T+LEK+C+Y ++N ++    +  +F I PE+ LEL + A YL
Subjt:  KEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKE-TEFPIEPELTLELTMAANYL

Arabidopsis top hitse value%identityAlignment
AT5G59140.1 BTB/POZ domain-containing protein7.0e-3980.85Show/hide
Query:  DTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT
        +TVKLIS EGFEF+I  +AAMVSQTIR+MLTSPG F+ESK   VTFP+ISTTILEKICQYFYW+LQ++RGKETEF IEPELTLEL MAANYLHT
Subjt:  DTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAGATACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCCTCATTCACATGGACGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACATCGCC
AGGAAACTTCGCTGAATCGAAGCACAGGGAAGTGACTTTTCCCGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATACTTTTACTGGAATCTTCAATTTGCCAGAG
GGAAAGAGACCGAGTTCCCAATCGAACCAGAATTGACTCTTGAGTTGACGATGGCTGCCAACTATCTCCATACATGA
mRNA sequenceShow/hide mRNA sequence
CTTAGCTTATAACTAAAGGTTACAAAACGTGGATTAAATTTGTAAAGATATATAAGTTAAGGAAAAAGTTAGCTGCAATGCGAAGAAAGACGAAGGAGAATCAAGAGGCC
GAAAACCAGAGGAAATGAAGAAGGAAGATACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCCTCATTCACATGGACGCTGCCATGGTTTCTCAGACCATTCGAAAC
ATGCTTACATCGCCAGGAAACTTCGCTGAATCGAAGCACAGGGAAGTGACTTTTCCCGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATACTTTTACTGGAATCT
TCAATTTGCCAGAGGGAAAGAGACCGAGTTCCCAATCGAACCAGAATTGACTCTTGAGTTGACGATGGCTGCCAACTATCTCCATACATGAACTACCATGTGCATTCTTC
CGCAGTGTGCAAGAAATAGATTTCCTCGACTAGAATGAATGCTAGTAAGGTTCATTATTCAATGCTTCCCTTTTCTTTGGGGAGATTTATCTAACAGAATACATACTTGT
GGATGATATTGATGCTTCATTTTACTCATTGGAACAACCCCATGTCATCTATTGAGCAATGATATTCACTCCATGGAATTATTGTACGGACAAATGTTGTGTATTTGTTT
TGCTTGAACCATCATAACTTCTCAAGAGTTGATTATAGCATAAACAATCAAGTTCTTAGACTGTATTTTGGTTCAGTGGCTCATGTGGGTTAAAGAATGTATATGCTGCC
TACTCAGCTCTGAGATGGCATCTCTGTTTTCATTATCTTTTGTTTCAAG
Protein sequenceShow/hide protein sequence
MKKEDTVKLISAEGFEFLIHMDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFYWNLQFARGKETEFPIEPELTLELTMAANYLHT