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Sed0004720 (gene) of Chayote v1 genome

Gene IDSed0004720
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:12920744..12921973
RNA-Seq ExpressionSed0004720
SyntenySed0004720
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4381998.1 hypothetical protein G4B88_006630 [Cannabis sativa]4.1e-2338.55Show/hide
Query:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS
        RL++    PW+  GD NE L   EKK GS    + M  F+  ++  SL DLG+ G  FTW N+  GGA + +RLDR+  N+    LFP  +VL+ D+  S
Subjt:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS

Query:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD
        DHRPI    ++ S R     + CF FE  W+ DP+C  +I  SW       A QD ++D+     D
Subjt:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD

KAF4383622.1 hypothetical protein F8388_014122 [Cannabis sativa]4.1e-2338.55Show/hide
Query:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS
        RL++    PW+  GD NE L   EKK GS    + M  F+  ++  SL DLG+ G  FTW N+  GGA + +RLDR+  N+    LFP  +VL+ D+  S
Subjt:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS

Query:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD
        DHRPI    ++ S R     + CF FE  W+ DP+C  +I  SW       A QD ++D+     D
Subjt:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD

KAG6636592.1 hypothetical protein CIPAW_11G121200 [Carya illinoinensis]4.9e-2439.63Show/hide
Query:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD
        L + +  PWL+ GDLNE L   EK+ G     + ++ F+EV+ E  L+DLGY G  FTW N   G A IF+ LDRF+GN+ L  LFP   V H +   SD
Subjt:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD

Query:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL
        H PI F   +F         FH E  W+ + QC  +I + W  R     + DL+  +  C QQL
Subjt:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL

XP_042950313.1 uncharacterized protein LOC122282426 [Carya illinoinensis]4.9e-2439.63Show/hide
Query:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD
        L + +  PWL+ GDLNE L   EK+ G     + ++ F+EV+ E  L+DLGY G  FTW N   G A IF+ LDRF+GN+ L  LFP   V H +   SD
Subjt:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD

Query:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL
        H PI F   +F         FH E  W+ + QC  +I + W  R     + DL+  +  C QQL
Subjt:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL

XP_042980077.1 uncharacterized protein LOC122310261 [Carya illinoinensis]8.4e-2439.63Show/hide
Query:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD
        L + +  PWL+ GDLNE L   EK+ G     + ++ F+EV+ E  L+DLGY G  FTW N   G A IF+RLDRF+GN+ L  LFP   V H +   SD
Subjt:  LQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASD

Query:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL
        H PI F   +F         F FE  W+ + QC  +I + W  R     + +L+  +  C QQL
Subjt:  HRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDK--VVDLVECLTDCKQQL

TrEMBL top hitse value%identityAlignment
A0A5B6UAF9 Reverse transcriptase2.2e-2237.82Show/hide
Query:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS
        RL +E+T PWL+ GD NE L++ EKK G L     MD F++++ +  L D+GYSG  FTW         I KRLDR + N+    LF   RV HL +  S
Subjt:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS

Query:  DHRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL
        DH P+  +  D S     Q  FHFE +W  +     +I+E WE   +  +  ++ L
Subjt:  DHRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL

A0A5B6VBB6 Reverse transcriptase3.4e-2337.16Show/hide
Query:  PWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASDHRPICFV
        PWL+ GD NE L+  EKK G +     MD+F++ + E  L D+GYSG  FTW         I +RLDR + NE   +LFP   V HL +  SDH P+   
Subjt:  PWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASDHRPICFV

Query:  DDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL
         D    + W +  FHFE +WM +     +I+E+W+   + +++ +EC+
Subjt:  DDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL

A0A5B6VEN5 Reverse transcriptase1.3e-2237.16Show/hide
Query:  PWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASDHRPICFV
        PWL+ GD NE L+  EKK G +     MD F++ + E  L D+GYSG  FTW         I +RLDR + NE   +LFP   V HL +  SDH P+   
Subjt:  PWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFASDHRPICFV

Query:  DDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL
         D    +++G+  FHFE +W  +     +I+E+WE   + +++ +EC+
Subjt:  DDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECL

A0A7J6GGL8 CCHC-type domain-containing protein2.0e-2338.55Show/hide
Query:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS
        RL++    PW+  GD NE L   EKK GS    + M  F+  ++  SL DLG+ G  FTW N+  GGA + +RLDR+  N+    LFP  +VL+ D+  S
Subjt:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS

Query:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD
        DHRPI    ++ S R     + CF FE  W+ DP+C  +I  SW       A QD ++D+     D
Subjt:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD

A0A7J6GL46 CCHC-type domain-containing protein2.0e-2338.55Show/hide
Query:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS
        RL++    PW+  GD NE L   EKK GS    + M  F+  ++  SL DLG+ G  FTW N+  GGA + +RLDR+  N+    LFP  +VL+ D+  S
Subjt:  RLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGAPIFKRLDRFLGNESLCALFPKARVLHLDWFAS

Query:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD
        DHRPI    ++ S R     + CF FE  W+ DP+C  +I  SW       A QD ++D+     D
Subjt:  DHRPICFVDDDFSDRDW--GQPCFHFEDFWMDDPQCAPLIRESW------EARQDKVVDLVECLTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAGATGCTATTGAAGATAGATCTAAAGATCAAAGTTTGATGAAAGATTTTCATGCAGTTAATAATGAAGTGGAGACAGATTGTGAAATCTGTGGTGAG
ATAGAATCTGGAAGAAGTGTTAATGTTTTGAATGAAAAAATTGATGTTATGGATATGGCAAGAGAGGAGCACAAAGTTAGAAAATTCAAAAGGTTCAATCGTATT
CAAAAGCATTCAGAAGATATTGAAAGTGTTGAGTTGGGTGATAAGGGAGAGAGGAAAATGGAGGATACTGGGATAGTGTTGGAAAAAGTGGTGGCCTTGGTCTTC
TTTGGAGAGATGAAATTGATTTACATATATGATCTTTCTCAAAGAATCATATTGATTGCTGGATTTCTTCAAGAAATATTGGGTGGAGGTTTACTGGAGTTTATG
GGAGCCCGGCTTCAAAATGAAGATACTACTCCTTGGCTGATTGAGGGAGATTTAAACGAGGCTTTGTGGGCTCGCGAGAAGAAAGAAGGATCTTTAGAGATTTCG
GCCACTATGGATCTCTTTAAAGAGGTTGTGAATGAGCTTTCCCTAAAGGATTTAGGGTATTCGGGAGACATTTTTACGTGGAGTAATAGATGGACTGGAGGTGCT
CCTATATTTAAACGCCTAGACAGATTTCTAGGAAATGAGTCTCTTTGTGCTCTTTTTCCGAAAGCTAGAGTCCTCCATTTGGACTGGTTTGCCTCGGATCACCGA
CCAATTTGTTTCGTTGATGATGATTTTTCGGATAGAGATTGGGGCCAACCTTGTTTTCATTTTGAAGATTTTTGGATGGATGATCCTCAATGTGCTCCTTTAATA
AGGGAGAGCTGGGAGGCGAGACAAGATAAAGTAGTTGATTTGGTTGAATGTCTGACGGATTGCAAGCAACAATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAAGATGCTATTGAAGATAGATCTAAAGATCAAAGTTTGATGAAAGATTTTCATGCAGTTAATAATGAAGTGGAGACAGATTGTGAAATCTGTGGTGAG
ATAGAATCTGGAAGAAGTGTTAATGTTTTGAATGAAAAAATTGATGTTATGGATATGGCAAGAGAGGAGCACAAAGTTAGAAAATTCAAAAGGTTCAATCGTATT
CAAAAGCATTCAGAAGATATTGAAAGTGTTGAGTTGGGTGATAAGGGAGAGAGGAAAATGGAGGATACTGGGATAGTGTTGGAAAAAGTGGTGGCCTTGGTCTTC
TTTGGAGAGATGAAATTGATTTACATATATGATCTTTCTCAAAGAATCATATTGATTGCTGGATTTCTTCAAGAAATATTGGGTGGAGGTTTACTGGAGTTTATG
GGAGCCCGGCTTCAAAATGAAGATACTACTCCTTGGCTGATTGAGGGAGATTTAAACGAGGCTTTGTGGGCTCGCGAGAAGAAAGAAGGATCTTTAGAGATTTCG
GCCACTATGGATCTCTTTAAAGAGGTTGTGAATGAGCTTTCCCTAAAGGATTTAGGGTATTCGGGAGACATTTTTACGTGGAGTAATAGATGGACTGGAGGTGCT
CCTATATTTAAACGCCTAGACAGATTTCTAGGAAATGAGTCTCTTTGTGCTCTTTTTCCGAAAGCTAGAGTCCTCCATTTGGACTGGTTTGCCTCGGATCACCGA
CCAATTTGTTTCGTTGATGATGATTTTTCGGATAGAGATTGGGGCCAACCTTGTTTTCATTTTGAAGATTTTTGGATGGATGATCCTCAATGTGCTCCTTTAATA
AGGGAGAGCTGGGAGGCGAGACAAGATAAAGTAGTTGATTTGGTTGAATGTCTGACGGATTGCAAGCAACAATTATAG
Protein sequenceShow/hide protein sequence
MVEDAIEDRSKDQSLMKDFHAVNNEVETDCEICGEIESGRSVNVLNEKIDVMDMAREEHKVRKFKRFNRIQKHSEDIESVELGDKGERKMEDTGIVLEKVVALVF
FGEMKLIYIYDLSQRIILIAGFLQEILGGGLLEFMGARLQNEDTTPWLIEGDLNEALWAREKKEGSLEISATMDLFKEVVNELSLKDLGYSGDIFTWSNRWTGGA
PIFKRLDRFLGNESLCALFPKARVLHLDWFASDHRPICFVDDDFSDRDWGQPCFHFEDFWMDDPQCAPLIRESWEARQDKVVDLVECLTDCKQQL