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Sed0004738 (gene) of Chayote v1 genome

Gene IDSed0004738
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:1859152..1862313
RNA-Seq ExpressionSed0004738
SyntenySed0004738
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047735.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-2557.02Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        +S ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-2555.74Show/hide
Query:  RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDM
        R++ ++  P++MSVM+T+  T ++R+AE EKK++ML++ V+EK+ EI  LKN IESRD  ES  THT+ N +KGK+IMQE   Q++ SIA+LSVQQLQ+M
Subjt:  RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDM

Query:  IMTLIIAQYGGPAQSSLLYSKP
        I   I  QYGGPAQ+  LYSKP
Subjt:  IMTLIIAQYGGPAQSSLLYSKP

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.0e-2557.02Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        +S ++S+P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  H V N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.6e-2556.2Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-2556.2Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

TrEMBL top hitse value%identityAlignment
A0A5A7U259 Ty3-gypsy retrotransposon protein4.2e-2557.02Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        +S ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

A0A5A7U5H1 Ty3-gypsy retrotransposon protein4.2e-2555.74Show/hide
Query:  RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDM
        R++ ++  P++MSVM+T+  T ++R+AE EKK++ML++ V+EK+ EI  LKN IESRD  ES  THT+ N +KGK+IMQE   Q++ SIA+LSVQQLQ+M
Subjt:  RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDM

Query:  IMTLIIAQYGGPAQSSLLYSKP
        I   I  QYGGPAQ+  LYSKP
Subjt:  IMTLIIAQYGGPAQSSLLYSKP

A0A5A7UUI7 Ty3-gypsy retrotransposon protein3.2e-2556.2Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

A0A5A7UXF0 Ty3-gypsy retrotransposon protein2.4e-2557.02Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        +S ++S+P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  H V N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

A0A5D3BX77 Retrotransposon gag protein3.2e-2556.2Show/hide
Query:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI
        ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  ES+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI
Subjt:  TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMI

Query:  MTLIIAQYGGPAQSSLLYSKP
         + I  QYGGPAQ+  LYSKP
Subjt:  MTLIIAQYGGPAQSSLLYSKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATAAACACGAATAGAGCACATAGCTTGAGTCCATACTTGGACCTCGGATGCCAACTCGTGGTCTTAGTCCGAATAATCCACCACACAATACGCCCTATACGAGA
AACAAGCGCGACGGACACACGAACGAGCCGATTGCACGAGCGAGGCAGCAATAGGGCTGAGCTTGACGAATTGCTGGTCGGCGACGGAAGAGAAAATCGCGAAGAAGATC
GCAGTCGGTTGGAGGAAGAATCGCGAAGAAGAAAAAGAACGAGGGAGAAGGCTTCGGGCGGGCTCTTTTTCAGAAATTCAGAACTCAGAGCATCCAACCATCCAAATCCT
CAAGCCCTCAAGATCAGTCAGCGAGAACTCTCAACGACAAAGGCTTCCTCAAACCGATCGTGTCTTCACCAACATACTGAAGATTCGATCATCCTCCATCTGAGAACAAG
CTCACAAATTTCAAATCCTGATGTGATGTCCGTGATGATGACTAATACGTCTACTAGGAAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAG
TAAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTACCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATG
CAAGAAGATCACTCACAGCATAATGCTTCAATTGCTACACTATCTGTTCAACAGTTGCAAGATATGATTATGACCTTAATCATAGCACAATATGGTGGACCTGCTCAGAG
CTCTTTATTGTACTCGAAGCCAACTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATAAACACGAATAGAGCACATAGCTTGAGTCCATACTTGGACCTCGGATGCCAACTCGTGGTCTTAGTCCGAATAATCCACCACACAATACGCCCTATACGAGA
AACAAGCGCGACGGACACACGAACGAGCCGATTGCACGAGCGAGGCAGCAATAGGGCTGAGCTTGACGAATTGCTGGTCGGCGACGGAAGAGAAAATCGCGAAGAAGATC
GCAGTCGGTTGGAGGAAGAATCGCGAAGAAGAAAAAGAACGAGGGAGAAGGCTTCGGGCGGGCTCTTTTTCAGAAATTCAGAACTCAGAGCATCCAACCATCCAAATCCT
CAAGCCCTCAAGATCAGTCAGCGAGAACTCTCAACGACAAAGGCTTCCTCAAACCGATCGTGTCTTCACCAACATACTGAAGATTCGATCATCCTCCATCTGAGAACAAG
CTCACAAATTTCAAATCCTGATGTGATGTCCGTGATGATGACTAATACGTCTACTAGGAAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAG
TAAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTACCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATG
CAAGAAGATCACTCACAGCATAATGCTTCAATTGCTACACTATCTGTTCAACAGTTGCAAGATATGATTATGACCTTAATCATAGCACAATATGGTGGACCTGCTCAGAG
CTCTTTATTGTACTCGAAGCCAACTGGTTAA
Protein sequenceShow/hide protein sequence
MSINTNRAHSLSPYLDLGCQLVVLVRIIHHTIRPIRETSATDTRTSRLHERGSNRAELDELLVGDGRENREEDRSRLEEESRRRKRTREKASGGLFFRNSELRASNHPNP
QALKISQRELSTTKASSNRSCLHQHTEDSIILHLRTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVESTHTVINKDKGKSIM
QEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSKPTG