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Sed0004762 (gene) of Chayote v1 genome

Gene IDSed0004762
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S31, chloroplastic
Genome locationLG14:6460105..6461629
RNA-Seq ExpressionSed0004762
SyntenySed0004762
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR030826 - 30S ribosomal protein
IPR044695 - 30S ribosomal protein S31, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147884.1 30S ribosomal protein S31, chloroplastic [Cucumis sativus]1.1e-4082.76Show/hide
Query:  MASLPFGLL--VSQSPRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKDK
        MASLPFGLL   SQSPRFFSFSKSE L +SLRA STASLA S+P  PSS+PA+YCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRVP+PP PPRKDK
Subjt:  MASLPFGLL--VSQSPRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKDK

Query:  YEDDEKIKIEIDESLF
        ++D+EKIKIEIDESLF
Subjt:  YEDDEKIKIEIDESLF

XP_022151467.1 30S ribosomal protein S31, chloroplastic [Momordica charantia]3.0e-4385.12Show/hide
Query:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRASTASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPR
        MASLPFGLL   SQ    SPRFFSFSKSETL +SLRASTASLATS  S PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRG PRVP+PP PPR
Subjt:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRASTASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPR

Query:  KDKYEDDEKIKIEIDESLFSR
        KDK+EDDEKIKIEID+SLF+R
Subjt:  KDKYEDDEKIKIEIDESLFSR

XP_022931892.1 30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata]1.5e-3978.99Show/hide
Query:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASLPFGLL +       SPR FSFSKSETL +SLR ST + ATSS PSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRVP+PP PPRKD
Subjt:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFSR
        K++DDEKIKIEIDESLFSR
Subjt:  KYEDDEKIKIEIDESLFSR

XP_023517799.1 30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]3.4e-3978.99Show/hide
Query:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASLPFGLL +       SPR FSFSKSETL +SLR ST   ATSS PSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRVP+PP PPRKD
Subjt:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFSR
        K++DDEKIKIEIDESLFSR
Subjt:  KYEDDEKIKIEIDESLFSR

XP_038882305.1 30S ribosomal protein S31, chloroplastic [Benincasa hispida]6.9e-4082.64Show/hide
Query:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRA-STASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPP
        MASLPFGLL   SQ    SPRFFSFSKSETL +SLRA STASLATS  S PSS+PAVYCGRGDKKTEKGKRFN SYGNARPR+KTKGRG PRVP+PP PP
Subjt:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRA-STASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPP

Query:  RKDKYEDDEKIKIEIDESLFS
        RKDK+EDDEKIKIEIDESLF+
Subjt:  RKDKYEDDEKIKIEIDESLFS

TrEMBL top hitse value%identityAlignment
A0A0A0KXY4 Uncharacterized protein5.1e-4182.76Show/hide
Query:  MASLPFGLL--VSQSPRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKDK
        MASLPFGLL   SQSPRFFSFSKSE L +SLRA STASLA S+P  PSS+PA+YCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRVP+PP PPRKDK
Subjt:  MASLPFGLL--VSQSPRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKDK

Query:  YEDDEKIKIEIDESLF
        ++D+EKIKIEIDESLF
Subjt:  YEDDEKIKIEIDESLF

A0A5A7TU27 30S ribosomal protein S311.6e-3977.69Show/hide
Query:  MASLPFGLLVSQS------PRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPP
        M SLPFGLL + S      P +FSFSKSETL +SLRA STASLA S+P  PSS+PAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRG PRVP+PP PP
Subjt:  MASLPFGLLVSQS------PRFFSFSKSETLRSSLRA-STASLATSSP--PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPP

Query:  RKDKYEDDEKIKIEIDESLFS
        RKDK++DDEKIKIEIDESLF+
Subjt:  RKDKYEDDEKIKIEIDESLFS

A0A6J1DDL3 30S ribosomal protein S31, chloroplastic1.4e-4385.12Show/hide
Query:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRASTASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPR
        MASLPFGLL   SQ    SPRFFSFSKSETL +SLRASTASLATS  S PSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRG PRVP+PP PPR
Subjt:  MASLPFGLL--VSQ----SPRFFSFSKSETLRSSLRASTASLATS--SPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPR

Query:  KDKYEDDEKIKIEIDESLFSR
        KDK+EDDEKIKIEID+SLF+R
Subjt:  KDKYEDDEKIKIEIDESLFSR

A0A6J1EV33 30S ribosomal protein S31, chloroplastic-like7.4e-4078.99Show/hide
Query:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASLPFGLL +       SPR FSFSKSETL +SLR ST + ATSS PSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRVP+PP PPRKD
Subjt:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFSR
        K++DDEKIKIEIDESLFSR
Subjt:  KYEDDEKIKIEIDESLFSR

A0A6J1HRX4 30S ribosomal protein S31, chloroplastic7.4e-4078.99Show/hide
Query:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASLPFGLL +       SPR FSFSKSETL +SLR ST + ATSS PSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRG PRVP+PP PPRKD
Subjt:  MASLPFGLLVSQ------SPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFSR
        K++DDEKIKIEIDESLFSR
Subjt:  KYEDDEKIKIEIDESLFSR

SwissProt top hitse value%identityAlignment
O80439 30S ribosomal protein S31, chloroplastic5.3e-2763.56Show/hide
Query:  MASLPFG----LLVSQSPRFFSFSKSETLRSSLRAST--ASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASL  G    + V+      S S SET   SL   T   SL+TSS  SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP PPRKD
Subjt:  MASLPFG----LLVSQSPRFFSFSKSETLRSSLRAST--ASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFS
        K+E+DEKIKI+IDESLFS
Subjt:  KYEDDEKIKIEIDESLFS

P47909 30S ribosomal protein S31, mitochondrial7.4e-0556Show/hide
Query:  AVYCGRGDKKTEKGKRFNHSYGNARPR-----DKTKGR-GIPRVPSPPLP
        AV CGRGDKKT++GKRF  SYGNARP+     ++ K R  +PR    PLP
Subjt:  AVYCGRGDKKTEKGKRFNHSYGNARPR-----DKTKGR-GIPRVPSPPLP

P47910 30S ribosomal protein S31, chloroplastic4.4e-1354.67Show/hide
Query:  FSFSKSETLRSSLRASTASLATSSPPSSVPA---VYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPP
        FSFS S+++     +S  +L+ SS  S+ PA   +YCGRGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P
Subjt:  FSFSKSETLRSSLRASTASLATSSPPSSVPA---VYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPP

Arabidopsis top hitse value%identityAlignment
AT2G21290.1 unknown protein3.8e-0444Show/hide
Query:  SETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPR-----DKTKGR-GIPRVPSPPLP
        S  L  S R S+ S A ++P  S   + CGRGDKKT+KGKRF  SYGN+R +     ++ K +  +PR    PLP
Subjt:  SETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPR-----DKTKGR-GIPRVPSPPLP

AT2G38140.1 plastid-specific ribosomal protein 43.8e-2863.56Show/hide
Query:  MASLPFG----LLVSQSPRFFSFSKSETLRSSLRAST--ASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD
        MASL  G    + V+      S S SET   SL   T   SL+TSS  SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP PPRKD
Subjt:  MASLPFG----LLVSQSPRFFSFSKSETLRSSLRAST--ASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKD

Query:  KYEDDEKIKIEIDESLFS
        K+E+DEKIKI+IDESLFS
Subjt:  KYEDDEKIKIEIDESLFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCACTTCCTTTCGGACTTCTTGTTTCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCCGAAACCCTAAGATCCTCTCTCCGTGCTTCTACTGCTTCTCTCGC
AACCTCTTCGCCGCCGTCTTCAGTTCCCGCCGTGTATTGTGGAAGAGGTGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCCTACGGCAATGCAAGGCCTCGGG
ACAAGACGAAAGGGAGAGGGATTCCGAGAGTACCGAGTCCTCCTTTGCCGCCTAGGAAGGATAAATATGAAGACGATGAGAAAATCAAGATCGAAATAGACGAGTCTCTT
TTTTCCAGATAG
mRNA sequenceShow/hide mRNA sequence
GAAACTTATCTTCGTGACTTCTGTGCTTCAATCTTCATCCATCAATGGCTTCACTTCCTTTCGGACTTCTTGTTTCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCC
GAAACCCTAAGATCCTCTCTCCGTGCTTCTACTGCTTCTCTCGCAACCTCTTCGCCGCCGTCTTCAGTTCCCGCCGTGTATTGTGGAAGAGGTGATAAGAAAACGGAGAA
AGGAAAGCGGTTCAATCATTCCTACGGCAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGATTCCGAGAGTACCGAGTCCTCCTTTGCCGCCTAGGAAGGATAAAT
ATGAAGACGATGAGAAAATCAAGATCGAAATAGACGAGTCTCTTTTTTCCAGATAGTCATGGAGCAACCTAATTCTGTTTATTTGAAATGTGTGTTTCTTAATCCAGAAG
GTACTGCCACTTCTTGTATTCGCATTGTTTTTGTACGAATTCTTATGTTAGTTGCTCATTGGATTCTTAAATCTGCTGTTTGTTTTCTGTCTACTCAAAGTATGAACTTT
CTCTCTGGCTTTCTTAACCATTTCTGAGGTAGACTCGGCCCATTGTGTCACTAGCAGGCCTTGGTTTCAAAGGGAATTTAAGTTAATTTTCTCCTCCATGTTATGGAAGG
CTAGAGTTGAGCTATTTAAGATTAAAGTTAGATACAAAAGGAATCTACTTGGGCCTTTTTGGTTTTGCAAATTTCTCTCCAATTCTCTTGGTTTAGCTTTATAGGG
Protein sequenceShow/hide protein sequence
MASLPFGLLVSQSPRFFSFSKSETLRSSLRASTASLATSSPPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGIPRVPSPPLPPRKDKYEDDEKIKIEIDESL
FSR