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Sed0004804 (gene) of Chayote v1 genome

Gene IDSed0004804
OrganismSechium edule (Chayote v1)
Descriptionthionin-like protein 2
Genome locationLG09:38997296..38998792
RNA-Seq ExpressionSed0004804
SyntenySed0004804
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461039.1 PREDICTED: thionin-like protein 2 [Cucumis melo]6.9e-3869.3Show/hide
Query:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK
        KWALMAWL+ + +++ A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACI+PS+PID++   +  R++QQNHFFC LGCAAS+C  FST+Q   E+K
Subjt:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK

Query:  VGNCVDSCSQTCSM
        V  CVDSCSQTCSM
Subjt:  VGNCVDSCSQTCSM

XP_011659556.1 thionin-like protein 2 [Cucumis sativus]6.3e-3971.05Show/hide
Query:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK
        KWALMAWL+ + +++ A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACI+PS+PID+    +  R+QQQNHFFC LGCAAS+C  FST+Q   E+K
Subjt:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK

Query:  VGNCVDSCSQTCSM
        VG CVDSCSQTCSM
Subjt:  VGNCVDSCSQTCSM

XP_022953260.1 thionin-like protein 2 [Cucurbita moschata]1.1e-3870.34Show/hide
Query:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT
        S + K  LMAWLV S ++T A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACIIPS+PI N    + + RQQ+N FFC LGCAAS+C  FST Q  
Subjt:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT

Query:  AEKKVGNCVDSCSQTCSM
        AEKKVG+CVDSCS+TCSM
Subjt:  AEKKVGNCVDSCSQTCSM

XP_022992447.1 thionin-like protein 2 [Cucurbita maxima]5.3e-3870.34Show/hide
Query:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT
        S + K  LMAWLV S ++T A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACIIPS+PI +N  A+ + RQQ+N FFC LGCAAS+C  FST++  
Subjt:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT

Query:  AEKKVGNCVDSCSQTCSM
        AEKKVG+CVDSCS+TCSM
Subjt:  AEKKVGNCVDSCSQTCSM

XP_038899383.1 thionin-like protein 2 [Benincasa hispida]7.4e-4072.81Show/hide
Query:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK
        KWAL+AWL+ S +++ A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACIIPS+PIDN    N + RQ+QN FFC LGCA S+C  FST+Q  AEK+
Subjt:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK

Query:  VGNCVDSCSQTCSM
        VGNCVDSCSQTCSM
Subjt:  VGNCVDSCSQTCSM

TrEMBL top hitse value%identityAlignment
A0A0A0K781 Uncharacterized protein3.0e-3971.05Show/hide
Query:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK
        KWALMAWL+ + +++ A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACI+PS+PID+    +  R+QQQNHFFC LGCAAS+C  FST+Q   E+K
Subjt:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK

Query:  VGNCVDSCSQTCSM
        VG CVDSCSQTCSM
Subjt:  VGNCVDSCSQTCSM

A0A1S3CDU4 thionin-like protein 23.4e-3869.3Show/hide
Query:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK
        KWALMAWL+ + +++ A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACI+PS+PID++   +  R++QQNHFFC LGCAAS+C  FST+Q   E+K
Subjt:  KWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKK

Query:  VGNCVDSCSQTCSM
        V  CVDSCSQTCSM
Subjt:  VGNCVDSCSQTCSM

A0A6J1CW29 thionin-like protein 21.0e-3463.64Show/hide
Query:  QGKWAL---MAWL-VASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDN-NPNANQLRRQQQNHFFCHLGCAASTCANFSTR
        +GKW L   M WL V S  +T A+ TSFQECY TCF ICAITPG +FS+CPL+CLQACIIPS+PID+    A    R+  NHFFC LGCAA+ C NF+T 
Subjt:  QGKWAL---MAWL-VASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDN-NPNANQLRRQQQNHFFCHLGCAASTCANFSTR

Query:  QKTAEKKVGNCVDSCSQTCSM
           AEKKVG CVDSCS+TCSM
Subjt:  QKTAEKKVGNCVDSCSQTCSM

A0A6J1GMH5 thionin-like protein 25.2e-3970.34Show/hide
Query:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT
        S + K  LMAWLV S ++T A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACIIPS+PI N    + + RQQ+N FFC LGCAAS+C  FST Q  
Subjt:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT

Query:  AEKKVGNCVDSCSQTCSM
        AEKKVG+CVDSCS+TCSM
Subjt:  AEKKVGNCVDSCSQTCSM

A0A6J1JZ84 thionin-like protein 22.6e-3870.34Show/hide
Query:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT
        S + K  LMAWLV S ++T A  TSFQECY TCF ICAITPGVAFSDCPLRCLQACIIPS+PI +N  A+ + RQQ+N FFC LGCAAS+C  FST++  
Subjt:  SWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKT

Query:  AEKKVGNCVDSCSQTCSM
        AEKKVG+CVDSCS+TCSM
Subjt:  AEKKVGNCVDSCSQTCSM

SwissProt top hitse value%identityAlignment
A8MRP4 Thionin-like protein 21.7e-0733.98Show/hide
Query:  AVTPAKCTSFQECYFTCFAIC-AITPGVAFSDCPLRCLQACI-IPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQ
        A T A+   F+ECY  C   C A +    +  CP  C + C+  PS P  ++ N +      ++ +FC LGCA   C + S+ Q    ++V  CVDSCS 
Subjt:  AVTPAKCTSFQECYFTCFAIC-AITPGVAFSDCPLRCLQACI-IPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQ

Query:  TCS
         C+
Subjt:  TCS

Arabidopsis top hitse value%identityAlignment
AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.1.2e-0833.98Show/hide
Query:  AVTPAKCTSFQECYFTCFAIC-AITPGVAFSDCPLRCLQACI-IPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQ
        A T A+   F+ECY  C   C A +    +  CP  C + C+  PS P  ++ N +      ++ +FC LGCA   C + S+ Q    ++V  CVDSCS 
Subjt:  AVTPAKCTSFQECYFTCFAIC-AITPGVAFSDCPLRCLQACI-IPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQ

Query:  TCS
         C+
Subjt:  TCS

AT1G12672.1 unknown protein1.4e-0447.5Show/hide
Query:  NHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQTCS
        N ++C LGC+   CA+ S+ Q     KV +CVDSCS  CS
Subjt:  NHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQTCS

AT1G12672.2 unknown protein4.4e-0636.36Show/hide
Query:  CLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQTCS
        C++ C+ P  P     + N++     N ++C LGC+   CA+ S+ Q     KV +CVDSCS  CS
Subjt:  CLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGNCVDSCSQTCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGGAGCTGGCAGGGGAAATGGGCATTGATGGCGTGGCTGGTGGCAAGCTGGGCGGTAACGCCCGCGAAGTGCACATCTTTTCAAGAGTGTTACTTCACTTGTTT
TGCCATCTGCGCCATCACACCCGGCGTCGCCTTTTCCGACTGCCCGTTACGGTGCCTCCAAGCCTGCATTATTCCGTCTTATCCTATCGACAACAATCCTAACGCCAACC
AACTCCGTCGCCAACAACAGAATCATTTCTTTTGTCATCTTGGATGTGCGGCTTCCACTTGTGCCAACTTCAGCACTCGCCAAAAGACGGCTGAAAAGAAAGTGGGAAAC
TGTGTGGATTCATGCTCTCAGACATGCTCTATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
GAGAAGAAAAATAATCAGATGGCTAGGAGCTGGCAGGGGAAATGGGCATTGATGGCGTGGCTGGTGGCAAGCTGGGCGGTAACGCCCGCGAAGTGCACATCTTTTCAAGA
GTGTTACTTCACTTGTTTTGCCATCTGCGCCATCACACCCGGCGTCGCCTTTTCCGACTGCCCGTTACGGTGCCTCCAAGCCTGCATTATTCCGTCTTATCCTATCGACA
ACAATCCTAACGCCAACCAACTCCGTCGCCAACAACAGAATCATTTCTTTTGTCATCTTGGATGTGCGGCTTCCACTTGTGCCAACTTCAGCACTCGCCAAAAGACGGCT
GAAAAGAAAGTGGGAAACTGTGTGGATTCATGCTCTCAGACATGCTCTATGGTTTAATAATCTTCTGGAAAATGAAGCAATTCAAAACATATGGGTTATATATATATATA
TTTTTTTAATATATAGTAAGCTATATATTATGTTCTATATTGGAAATGAAACCCTACATTATTGTTGAAATTTCTTTCTATACTAAGAAATATTGGGTCTATTTATTGAT
GTATTTAGGCTAGCTATATACTTTAGTCTCTAATTTCTTTCTTTTCGTTCTCTTAATTTTGGATCATGTTTTATTGTTGGTTGATATAATTAAATTTATTCTGAA
Protein sequenceShow/hide protein sequence
MARSWQGKWALMAWLVASWAVTPAKCTSFQECYFTCFAICAITPGVAFSDCPLRCLQACIIPSYPIDNNPNANQLRRQQQNHFFCHLGCAASTCANFSTRQKTAEKKVGN
CVDSCSQTCSMV