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Sed0004826 (gene) of Chayote v1 genome

Gene IDSed0004826
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG11:25694800..25695818
RNA-Seq ExpressionSed0004826
SyntenySed0004826
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4262994.1 unnamed protein product [Prunus armeniaca]4.0e-1833.87Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + D ++++H+VP +  + N  R++G+  G+ L      D    G+FLR+++ +DV +PLRR  K+     G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE
        +V   YE+L  FC  CGR+GH+  +CSFV     +    P+G  L+    F    +GSP R  G G G  + RG     E G H E
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE

CAB4262995.1 unnamed protein product [Prunus armeniaca]4.0e-1833.87Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + D ++++H+VP +  + N  R++G+  G+ L      D    G+FLR+++ +DV +PLRR  K+     G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE
        +V   YE+L  FC  CGR+GH+  +CSFV     +    P+G  L+    F    +GSP R  G G G  + RG     E G H E
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE

TXG60912.1 hypothetical protein EZV62_012275 [Acer yangbiense]1.8e-2132.58Show/hide
Query:  ISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPL
        +S +V  K +  +G PW ++DA+I+ E   G   V+ M+F   +F++++H+VP  C T +  R LGS++G     DG     N  KFLR+++ IDV  PL
Subjt:  ISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPL

Query:  RRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-----SFVAIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDG
        RR L++ +   G E  + L YE+L  FC  CG LGH   DC       VAIGE   F +G  +R P  F R  +G   R     R   RG GE  R +  
Subjt:  RRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-----SFVAIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDG

Query:  GHFEKGDEPKTLEGGRREEARGISIFPTKGRH----LFASNGSPETALGEGEGKEEGRQELQEV
         H  +G +   +  G+     G  +   +G +    L ++    E A+   EG   G  +  +V
Subjt:  GHFEKGDEPKTLEGGRREEARGISIFPTKGRH----LFASNGSPETALGEGEGKEEGRQELQEV

VVA32948.1 PREDICTED: DUF4283 domain-containing [Prunus dulcis]4.8e-1934.97Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + DF++++H+VP +C + N  R++G+  G+ L      D +  G+FLRL++++DV +PLRR  K+   + G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRG-RGRGRGRGEVSRSEDG
        +V   YE+L  FC  CGRLGH+  +CSFV  A  +    P+G  L+    F    +G+P R  G G    G G  E     +G
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRG-RGRGRGRGEVSRSEDG

XP_021726128.1 uncharacterized protein LOC110693273 [Chenopodium quinoa]6.2e-1938.27Show/hide
Query:  ELEGVLTCKILSSN----QISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDK
        +L   +  K++ SN    Q  +DV K+ +  +G PW +D  ++L + + G+++ SE+ F +   +VRL DVP +     N  ++G  LG FL  D + + 
Subjt:  ELEGVLTCKILSSN----QISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDK

Query:  RNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDCSF
           G+F+R+K+ ID+ RPLRR L L  GA  A KW+ L YE+L  FC  CGRL H    CSF
Subjt:  RNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDCSF

TrEMBL top hitse value%identityAlignment
A0A5C7H399 CCHC-type domain-containing protein3.3e-1830.8Show/hide
Query:  KAQEIFELEEEDVAAYESELEGVLTCKILSSNQISSDVFK-KGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLG
        K + + E+ E        +++  L  K+L   +++ + FK + +     PW + +++I  E       +S++ F   +F++++HD+P  C     AR L 
Subjt:  KAQEIFELEEEDVAAYESELEGVLTCKILSSNQISSDVFK-KGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLG

Query:  SMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-SFVAIGEGIPFPFGEDLR------
          LG+ +    +  +   GKF+R+K++ID+ +PL+R LKLKSG       V L YE+LL FC  CGR+GH   +C   VA   G P  FG  L+      
Subjt:  SMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-SFVAIGEGIPFPFGEDLR------

Query:  -EPYRFSRGESGSPSRLAGRGRGR
          P   S+G  GS  R    G  R
Subjt:  -EPYRFSRGESGSPSRLAGRGRGR

A0A5C7HXM5 CCHC-type domain-containing protein8.5e-2232.58Show/hide
Query:  ISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPL
        +S +V  K +  +G PW ++DA+I+ E   G   V+ M+F   +F++++H+VP  C T +  R LGS++G     DG     N  KFLR+++ IDV  PL
Subjt:  ISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPL

Query:  RRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-----SFVAIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDG
        RR L++ +   G E  + L YE+L  FC  CG LGH   DC       VAIGE   F +G  +R P  F R  +G   R     R   RG GE  R +  
Subjt:  RRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDC-----SFVAIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDG

Query:  GHFEKGDEPKTLEGGRREEARGISIFPTKGRH----LFASNGSPETALGEGEGKEEGRQELQEV
         H  +G +   +  G+     G  +   +G +    L ++    E A+   EG   G  +  +V
Subjt:  GHFEKGDEPKTLEGGRREEARGISIFPTKGRH----LFASNGSPETALGEGEGKEEGRQELQEV

A0A5E4G034 PREDICTED: DUF4283 domain-containing2.3e-1934.97Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + DF++++H+VP +C + N  R++G+  G+ L      D +  G+FLRL++++DV +PLRR  K+   + G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRG-RGRGRGRGEVSRSEDG
        +V   YE+L  FC  CGRLGH+  +CSFV  A  +    P+G  L+    F    +G+P R  G G    G G  E     +G
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRG-RGRGRGRGEVSRSEDG

A0A6J5TGK7 CCHC-type domain-containing protein2.0e-1833.87Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + D ++++H+VP +  + N  R++G+  G+ L      D    G+FLR+++ +DV +PLRR  K+     G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE
        +V   YE+L  FC  CGR+GH+  +CSFV     +    P+G  L+    F    +GSP R  G G G  + RG     E G H E
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE

A0A6J5TJ60 CCHC-type domain-containing protein2.0e-1833.87Show/hide
Query:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK
        PW +D A++L E   G    S+M   + D ++++H+VP +  + N  R++G+  G+ L      D    G+FLR+++ +DV +PLRR  K+     G   
Subjt:  PWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTGNNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEK

Query:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE
        +V   YE+L  FC  CGR+GH+  +CSFV     +    P+G  L+    F    +GSP R  G G G  + RG     E G H E
Subjt:  WVRLSYEKLLLFCRGCGRLGHMTSDCSFV--AIGEGIPFPFGEDLREPYRFSRGESGSPSRLAGRGRGRGRGRGEVSRSEDGGHFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCAGCACAGTTCGCTCAAATGATGGAAAAGCTAGACCTTGATGATCAAAAAGCACAAGAAATCTTTGAACTTGAAGAAGAAGATGTGGCAGCTTATGAAAGTGA
ACTTGAAGGGGTGCTGACGTGCAAAATTCTCTCTAGCAATCAGATTAGCTCAGATGTGTTCAAGAAGGGACAGAGTCCTAATGGCGAGCCGTGGATCTATGACGACGCGG
TGATATTGTTCGAGGCAATGGCAGGGGACAAGCGAGTTTCGGAGATGGAGTTCGCATTTGGAGATTTTTTTGTCAGACTTCACGATGTGCCTCCAGCGTGTCATACAGGA
AACAATGCAAGGAAACTAGGGAGTATGTTAGGGAAGTTCTTAGGATGGGATGGTGATGGAGATAAAAGGAACAGAGGAAAATTTTTAAGGCTCAAAATTGCAATTGATGT
TCGTAGACCGTTGAGAAGGGCGTTGAAGTTAAAAAGCGGAGCGATGGGGGCTGAGAAATGGGTAAGATTATCTTATGAAAAACTTCTGCTCTTCTGTCGCGGATGTGGAA
GATTAGGCCACATGACCTCTGATTGTAGCTTCGTTGCAATTGGAGAGGGTATTCCTTTCCCTTTTGGGGAAGATCTGAGAGAACCATATCGTTTTTCTAGGGGAGAATCA
GGGTCGCCGAGTAGATTGGCTGGGAGAGGAAGGGGTCGTGGAAGAGGAAGAGGGGAGGTATCTCGCAGTGAGGATGGTGGTCATTTTGAGAAAGGAGACGAGCCGAAAAC
GCTCGAAGGGGGGAGAAGAGAGGAGGCTAGGGGGATTTCGATTTTTCCGACGAAGGGGCGACACCTTTTTGCGAGTAACGGGTCGCCGGAGACGGCCTTGGGAGAAGGTG
AGGGAAAGGAGGAAGGTCGTCAGGAATTGCAGGAGGTTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCAGCACAGTTCGCTCAAATGATGGAAAAGCTAGACCTTGATGATCAAAAAGCACAAGAAATCTTTGAACTTGAAGAAGAAGATGTGGCAGCTTATGAAAGTGA
ACTTGAAGGGGTGCTGACGTGCAAAATTCTCTCTAGCAATCAGATTAGCTCAGATGTGTTCAAGAAGGGACAGAGTCCTAATGGCGAGCCGTGGATCTATGACGACGCGG
TGATATTGTTCGAGGCAATGGCAGGGGACAAGCGAGTTTCGGAGATGGAGTTCGCATTTGGAGATTTTTTTGTCAGACTTCACGATGTGCCTCCAGCGTGTCATACAGGA
AACAATGCAAGGAAACTAGGGAGTATGTTAGGGAAGTTCTTAGGATGGGATGGTGATGGAGATAAAAGGAACAGAGGAAAATTTTTAAGGCTCAAAATTGCAATTGATGT
TCGTAGACCGTTGAGAAGGGCGTTGAAGTTAAAAAGCGGAGCGATGGGGGCTGAGAAATGGGTAAGATTATCTTATGAAAAACTTCTGCTCTTCTGTCGCGGATGTGGAA
GATTAGGCCACATGACCTCTGATTGTAGCTTCGTTGCAATTGGAGAGGGTATTCCTTTCCCTTTTGGGGAAGATCTGAGAGAACCATATCGTTTTTCTAGGGGAGAATCA
GGGTCGCCGAGTAGATTGGCTGGGAGAGGAAGGGGTCGTGGAAGAGGAAGAGGGGAGGTATCTCGCAGTGAGGATGGTGGTCATTTTGAGAAAGGAGACGAGCCGAAAAC
GCTCGAAGGGGGGAGAAGAGAGGAGGCTAGGGGGATTTCGATTTTTCCGACGAAGGGGCGACACCTTTTTGCGAGTAACGGGTCGCCGGAGACGGCCTTGGGAGAAGGTG
AGGGAAAGGAGGAAGGTCGTCAGGAATTGCAGGAGGTTGTCTAA
Protein sequenceShow/hide protein sequence
MDPAQFAQMMEKLDLDDQKAQEIFELEEEDVAAYESELEGVLTCKILSSNQISSDVFKKGQSPNGEPWIYDDAVILFEAMAGDKRVSEMEFAFGDFFVRLHDVPPACHTG
NNARKLGSMLGKFLGWDGDGDKRNRGKFLRLKIAIDVRRPLRRALKLKSGAMGAEKWVRLSYEKLLLFCRGCGRLGHMTSDCSFVAIGEGIPFPFGEDLREPYRFSRGES
GSPSRLAGRGRGRGRGRGEVSRSEDGGHFEKGDEPKTLEGGRREEARGISIFPTKGRHLFASNGSPETALGEGEGKEEGRQELQEVV