CuGenDBv2

Gene ID	Sed0004840
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S13
Genome location	LG04:35727654..35730426
RNA-Seq Expression	Sed0004840
Synteny	Sed0004840
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF3433118.1 hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis]

9.4e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]

9.4e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]

3.2e-77

99.34

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_012829904.1 PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata]

1.2e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_017423846.1 PREDICTED: 40S ribosomal protein S13-like [Vigna angularis]

7.2e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hits

e value

%identity

Alignment

A0A022Q8L1 Ribosomal_S13_N domain-containing protein

5.9e-77

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A059CJ48 Ribosomal_S13_N domain-containing protein

4.5e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A218X097 40S ribosomal protein S13

4.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A2P5ADI8 Ribosomal protein

4.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1DES0 40S ribosomal protein S13

1.6e-77

99.34

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

4.8e-76

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISSQDVDE ICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-1

1.1e-75

94.04

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-2

2.8e-76

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S13

1.0e-78

97.35

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV+ENICKFAKKGLTPSQIGVILRDS+GIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-2

7.5e-69

86.75

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV+E I K AKKG  PSQIGV+LRD +GI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

7.7e-77

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A

2.0e-77

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGCCGTATGCACAGCCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCAAGTTGGTTGAAGATCTCTTCTCAGGATGTTGACGAGAACAT
TTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTGCGTGATTCTTATGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATTTTGCGCA
TATTGAAAGCTCATGGGCTAGCTCCTGAAATCCCGGAGGACCTTTACCATCTCATCAAGAAAGCTGTTTCCATCAGAAAGCATTTAGAGAGAAACAGGAAGGACAAGGAT
TCCAAGTTCAGATTGATTTTGGTGGAGAGCAGGATCCATCGCCTAGCCCGGTATTACAAGAAGACCAAGAAGCTTCCTCCTGTTTGGAAGTATGAATCCACCACGGCCAG
CACCCTCGTGGCTTAG

mRNA sequence

Show/hide mRNA sequence

GCAAATTTCTCAAATGCAAAATCAAAACCCTAATAAGCAGCCATTGATTTGCTCTTGCAGGGTTTGGGCAAAGGAGCAGACGAAGTTGAAGCTCAACTTCAGAATCCGAC
CATCGGAAGGCGTCTTCTTCTCCACGCTCCGTCGCCATGGGCCGTATGCACAGCCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCAAGTTG
GTTGAAGATCTCTTCTCAGGATGTTGACGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTGCGTGATTCTTATGGGATTGCTC
AGGTGAAAAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAAGCTCATGGGCTAGCTCCTGAAATCCCGGAGGACCTTTACCATCTCATCAAGAAAGCTGTTTCCATC
AGAAAGCATTTAGAGAGAAACAGGAAGGACAAGGATTCCAAGTTCAGATTGATTTTGGTGGAGAGCAGGATCCATCGCCTAGCCCGGTATTACAAGAAGACCAAGAAGCT
TCCTCCTGTTTGGAAGTATGAATCCACCACGGCCAGCACCCTCGTGGCTTAGAAGCATTGCTAATAGAACTGAGATATTTTGGCGATGCTATTTTCCATCAAGTGTTATG
TTTAATACATTATCAGTACTCTTCACCTGCAGTTATCCATATTGTACTTTGGAATTATTCAAGTTTTGTTAAATGCAAGTTTGATTTCTGCAATGTTTTTGTGAATGTTG
CCTGTTAAACGGCTCGTGTCGGTGCAATTTTTGAGGTTCTAGTTAGCTCTACCCATGGTCGCATTTCTTACTTGTCTTTAGTTCATGTTTTGGACTATGCTATTATAACA
TGGCTTGTTCTAAAGTTTG

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sed0004840 (gene) of Chayote v1 genome