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Sed0004863 (gene) of Chayote v1 genome

Gene IDSed0004863
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 13-like
Genome locationLG01:63260828..63261019
RNA-Seq ExpressionSed0004863
SyntenySed0004863
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570311.1 hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia]1.7e-0874.6Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL+LV+L  LVAFA T AQ AAPSEAPAPAPASDA LF PT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
KAG6605834.1 Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]9.2e-1077.78Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME+MK+KL+LV LLVLVAFAGTMAQAAAPSEAPAPAPASDA L Y + F  ASLS L FA+FL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
XP_022944304.1 arabinogalactan peptide 13-like [Cucurbita moschata]1.6e-0976.19Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL+LV+L  LVAFA T AQ AAPSEAPAPAPASDA LFYPT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
XP_023513159.1 arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]1.6e-0673.02Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL LV+L  LVAFA T AQ AAPSE  APAPASDA LFYPT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
XP_038902540.1 arabinogalactan protein 13-like [Benincasa hispida]1.1e-1077.78Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL+LVLL  L+AFAGT+AQ+A PSEAPAPAPASDASLFYPT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
TrEMBL top hitse value%identityAlignment
A0A2C9VZH4 Uncharacterized protein2.8e-0461.9Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME+MKM L++VL++VL+AF+ TM Q AA + APAP+P SDAS+F PT F  ASL AL+F FFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
A0A6J1FWG8 arabinogalactan peptide 13-like7.6e-1076.19Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL+LV+L  LVAFA T AQ AAPSEAPAPAPASDA LFYPT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
A0A6J1J5K6 arabinogalactan peptide 13-like7.6e-1076.19Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
        ME++K+KL+LV+L  LVAFA T AQ AAPSEAPAPAPASDA LFYPT F  ASLSAL FAFFL
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL
SwissProt top hitse value%identityAlignment
Q9LJD9 Arabinogalactan protein 127.1e-0549.18Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
        MESMKMKL +VL++ +VAF+  +   AA +EAPAP+P SDA++F P  F + +  A  F F
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
Q9LVC0 Arabinogalactan protein 146.4e-0653.23Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFF
        ME+MKMKLY+V+L+ ++AF+ T+ Q  A  +APAP+P SDAS F PT F  AS++ ++F FF
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFF
Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 214.7e-0445.9Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
        ME+MKMK+ + +++V VAF+   A  AA  EAPAP+P SDA++F P  F +    A  F F
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
AT3G13520.1 arabinogalactan protein 125.0e-0649.18Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
        MESMKMKL +VL++ +VAF+  +   AA +EAPAP+P SDA++F P  F + +  A  F F
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
AT4G26320.1 arabinogalactan protein 132.1e-0449.18Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
        ME+MKM+L++ +L+  +AF+    Q AA  EAPAP+P SDASL  P  F  AS++ L+F F
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAF
AT5G56540.1 arabinogalactan protein 144.6e-0753.23Show/hide
Query:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFF
        ME+MKMKLY+V+L+ ++AF+ T+ Q  A  +APAP+P SDAS F PT F  AS++ ++F FF
Subjt:  MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCAATGAAGATGAAGCTTTACCTGGTGCTGTTGCTGGTGTTGGTGGCCTTTGCTGGCACCATGGCCCAAGCTGCGGCTCCGTCTGAGGCTCCGGCTCCGGCTCC
CGCCTCCGATGCTTCTCTCTTTTACCCCACCACCTTCATTGCTGCTTCTTTATCTGCTCTTTCTTTTGCCTTCTTCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCAATGAAGATGAAGCTTTACCTGGTGCTGTTGCTGGTGTTGGTGGCCTTTGCTGGCACCATGGCCCAAGCTGCGGCTCCGTCTGAGGCTCCGGCTCCGGCTCC
CGCCTCCGATGCTTCTCTCTTTTACCCCACCACCTTCATTGCTGCTTCTTTATCTGCTCTTTCTTTTGCCTTCTTCCTTTAA
Protein sequenceShow/hide protein sequence
MESMKMKLYLVLLLVLVAFAGTMAQAAAPSEAPAPAPASDASLFYPTTFIAASLSALSFAFFL