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Sed0004872 (gene) of Chayote v1 genome

Gene IDSed0004872
OrganismSechium edule (Chayote v1)
DescriptiontRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Genome locationLG10:4241427..4241905
RNA-Seq ExpressionSed0004872
SyntenySed0004872
Gene Ontology termsGO:0048364 - root development (biological process)
GO:0050793 - regulation of developmental process (biological process)
InterPro domainsIPR033250 - C-terminally encoded peptide


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX91365.1 TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]4.0e-0947.73Show/hide
Query:  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHI
        L  +CV++L LILC       VE RHL+S  CKKCS+      +  +    +H+  G  Q+ +TSKAE  ++FRPTSPGHSPGVGH I
Subjt:  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHI

KAE8647497.1 hypothetical protein Csa_004238, partial [Cucumis sativus]4.3e-1960.64Show/hide
Query:  MMKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        MMK       +C++I+ L+LCLS E +YVECRHLKSSR CKKCSK IG++P    A     G  QQ  T KAE P++FRPTSPGHSPGVGHHIN
Subjt:  MMKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

KAG5241395.1 encoded peptide [Salix suchowensis]1.8e-0946.74Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        M TT+ +   CV++ FLILC  RE++ VE R LKS  C+KCS    ++       + G    Q+ KTSK    E+FRPT PGHSPGVGH +N
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

KAG6595044.1 hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2669.39Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHA-----GFGGN-QQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        MKTTQ LS +CV ILFLILCLS E +YVECRHLKSSRCKKC+KFI    V +    A     G  GN Q+ KTSKAEQP++FRPTSPGHSPGVGHHIN
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHA-----GFGGN-QQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

PNT27018.1 hypothetical protein POPTR_007G041400 [Populus trichocarpa]5.8e-0843.01Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        M TT+ ++  C+++ FLILC   E ++VE R LKS   CKKCS    ++       + G    Q+ +TSK +  ++FRPT PGHSPGVGH +N
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

TrEMBL top hitse value%identityAlignment
A0A061DGB8 tRNA Delta(2)-isopentenylpyrophosphate transferase, putative1.9e-0947.73Show/hide
Query:  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHI
        L  +CV++L LILC       VE RHL+S  CKKCS+      +  +    +H+  G  Q+ +TSKAE  ++FRPTSPGHSPGVGH I
Subjt:  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHI

A0A0A0KGB6 Uncharacterized protein2.8e-1667.14Show/hide
Query:  ESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        E +YVECRHLKSSR CKKCSK IG++P    A     G  QQ  T KAE P++FRPTSPGHSPGVGHHIN
Subjt:  ESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

A0A2K1ZP13 Uncharacterized protein2.8e-0843.01Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        M TT+ ++  C+++ FLILC   E ++VE R LKS   CKKCS    ++       + G    Q+ +TSK +  ++FRPT PGHSPGVGH +N
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

A0A6N2KZU9 Uncharacterized protein5.1e-1046.74Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        M TT+ +   CV++ FLILC  RE++ VE R LKS  C+KCS    ++       + G    Q+ KTSK    E+FRPT PGHSPGVGH +N
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

A0A6N2MKA4 Uncharacterized protein5.1e-1046.74Show/hide
Query:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN
        M TT+ +   CV++ FLILC  RE++ VE R LKS  CK+CS    ++       + G    Q+ KTSK    E+FRPT PGHSPGVGH +N
Subjt:  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN

SwissProt top hitse value%identityAlignment
P0DN97 Precursor of CEP86.2e-0537.35Show/hide
Query:  CVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGF---GGNQQVKTSKAEQ-PEEFRPTSPGHSPGVGH
        C+ +L + + +S E I  E RHL++ R     K I ++ + V     G    GG+ +   SK E   +EFRPT+PG+SPG+GH
Subjt:  CVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGF---GGNQQVKTSKAEQ-PEEFRPTSPGHSPGVGH

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGACAACTCAAACACTTTCCAAACTTTGTGTTATGATTCTTTTTTTGATTTTATGTTTAAGTCGTGAGAGTATTTACGTAGAATGTCGACATCTCAAGTCTTC
GAGATGCAAAAAATGCTCGAAATTTATCGGTTCGACGCCGGTTGCTGTTGCGGCCGCCCATGCGGGCTTCGGCGGAAATCAACAAGTGAAGACGAGCAAGGCAGAACAAC
CTGAAGAATTTCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCACCATATTAACACCTGA
mRNA sequenceShow/hide mRNA sequence
ATAACAAACCCATATACTCCATCCCAAATCACCATATATATAGAACATTAGGTTCAAAGCTTTTTGTCAAGCTTCTTTCTTTCTTTCTTACTCAATCTTACATTTCTTTT
TTTTTACTCTCTTTCCCTATAATGATGAAGACAACTCAAACACTTTCCAAACTTTGTGTTATGATTCTTTTTTTGATTTTATGTTTAAGTCGTGAGAGTATTTACGTAGA
ATGTCGACATCTCAAGTCTTCGAGATGCAAAAAATGCTCGAAATTTATCGGTTCGACGCCGGTTGCTGTTGCGGCCGCCCATGCGGGCTTCGGCGGAAATCAACAAGTGA
AGACGAGCAAGGCAGAACAACCTGAAGAATTTCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCACCATATTAACACCTGAAAAAGCTTCTGATTTCTGTGTGCT
AAATTTTAGTTCATATGCATTTCATTGTTTTCCCTCTCG
Protein sequenceShow/hide protein sequence
MMKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHINT