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Sed0004913 (gene) of Chayote v1 genome

Gene IDSed0004913
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor, MADS-box
Genome locationLG09:3635811..3636655
RNA-Seq ExpressionSed0004913
SyntenySed0004913
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]2.7e-2589.39Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNRYFIL
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEF SGNR ++L
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNRYFIL

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2495.16Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNR
        MGRKKIE+KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEF SG+R
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNR

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2493.55Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNR
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEF SGNR
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNR

XP_022959860.1 truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]3.9e-2495.08Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIE+KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEF SG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

XP_023514206.1 MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]3.9e-2495.08Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIE+KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEF SG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

TrEMBL top hitse value%identityAlignment
A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X12.7e-2390.16Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIEVKRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEF  GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X32.7e-2390.16Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIEVKRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEF  GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X22.7e-2390.16Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIEVKRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEF  GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like1.9e-2495.08Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIE+KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEF SG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

A0A6J1KPU7 MADS-box protein 04g005320-like2.4e-2493.44Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGRKKIE+KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEF SG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

SwissProt top hitse value%identityAlignment
A0A217EJJ0 Agamous-like MADS-box protein AGL118.7e-1970.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF++RGR+YE+S+ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

F6I457 Agamous-like MADS-box protein AGL118.7e-1970.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF++RGR+YE+S+ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

Q2QW53 MADS-box transcription factor 133.3e-1868.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR +IE+KRIE+  +R VTFCKRR+GL+KKA ELSVLCD EV L+VF++RGRLYE+S+ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

Q38836 Agamous-like MADS-box protein AGL111.1e-1870.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+++ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

Q40168 Floral homeotic protein AGAMOUS1.5e-1870.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        +GR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV LVVF+NRGRLYE+++ +
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

Arabidopsis top hitse value%identityAlignment
AT3G58780.3 K-box region and MADS-box transcription factor family protein1.0e-1948.39Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNRYFILWMKNRWNVVFRRVFSFSDLLLNVSLVR
        +GR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV LV+F+ RGRLYE+++ +  ++L  K +     + ++ +S  ++  ++ R
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNRYFILWMKNRWNVVFRRVFSFSDLLLNVSLVR

AT4G09960.1 K-box region and MADS-box transcription factor family protein8.0e-2070.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+++ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

AT4G09960.2 K-box region and MADS-box transcription factor family protein8.0e-2070.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+++ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

AT4G09960.3 K-box region and MADS-box transcription factor family protein8.0e-2070.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+++ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN

AT4G09960.4 K-box region and MADS-box transcription factor family protein8.0e-2070.49Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN
        MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+++ N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGATCTGGATTGATCAAGAAAGCTCGAGAGCTCTCTGT
TCTCTGCGACGTCGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGGCTCTACGAGTTTTCCAGCGGAAACAGGTACTTCATTTTGTGGATGAAAAATCGTTGGAATG
TAGTTTTCCGACGCGTTTTTTCGTTCTCGGATCTTTTGCTGAATGTTTCGCTCGTCCGTCCCTGGTTTTGTTACTCCGGATGTACGTGTTTTCTGCTTTATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGATCTGGATTGATCAAGAAAGCTCGAGAGCTCTCTGT
TCTCTGCGACGTCGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGGCTCTACGAGTTTTCCAGCGGAAACAGGTACTTCATTTTGTGGATGAAAAATCGTTGGAATG
TAGTTTTCCGACGCGTTTTTTCGTTCTCGGATCTTTTGCTGAATGTTTCGCTCGTCCGTCCCTGGTTTTGTTACTCCGGATGTACGTGTTTTCTGCTTTATGTGTGA
Protein sequenceShow/hide protein sequence
MGRKKIEVKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFSSGNRYFILWMKNRWNVVFRRVFSFSDLLLNVSLVRPWFCYSGCTCFLLYV