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Sed0004952 (gene) of Chayote v1 genome

Gene IDSed0004952
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG07:2991943..2992566
RNA-Seq ExpressionSed0004952
SyntenySed0004952
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057596.1 hypothetical protein E6C27_scaffold497G00730 [Cucumis melo var. makuwa]9.1e-1433.07Show/hide
Query:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAP---------------------SPAVSMD--SGH--RNISSGNS
        M +NE   + SV ++++ GLVK+  +S  DPS  VK+IAK GK A        APAP                     +PA + D  SGH  RN +S NS
Subjt:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAP---------------------SPAVSMD--SGH--RNISSGNS

Query:  DGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRSFWRQTSDPLPERYNRWPEPAPY
        + H       T+  N  +G F      S  VHI+EAA   PPV LP PN ++M               G      +  FW   S+P       W   +P 
Subjt:  DGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRSFWRQTSDPLPERYNRWPEPAPY

Query:  HWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV
              PPP  A+  P+     P P PYY Q+    +GN P  Y+ NDEN  GC I+
Subjt:  HWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV

KAG6593135.1 hypothetical protein SDJN03_12611, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2541.63Show/hide
Query:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAPSPAVSM-DSGHRNISSGNSDGHHHR---TNSSNPGSGQFWSGG
        M ANE  D+KSV ID+++GLV + +    DP TIV+++++ GKLA +QP    APAP+ + ++ DS H NI S  SD H ++   T +  PGS +     
Subjt:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAPSPAVSM-DSGHRNISSGNSDGHHHR---TNSSNPGSGQFWSGG

Query:  VHIDEAATAVPPVALP-------RPNLYMGGAGCSRNRSFWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQ---PPSQ
        VH +EAA AVPPV +P       RP    GG G   +R F R   +PLP+     P   P    P  PP +      Y+R SE  PPPYY+QQ   P   
Subjt:  VHIDEAATAVPPVALP-------RPNLYMGGAGCSRNRSFWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQ---PPSQ

Query:  MGNAPGRYMLNDENVNGCKIV
        +  APG Y+ NDENV+ CKI+
Subjt:  MGNAPGRYMLNDENVNGCKIV

KGN45423.2 hypothetical protein Csa_015802, partial [Cucumis sativus]1.3e-0431.79Show/hide
Query:  APAPSPAVSMDSGHRNISSGNSDGHHHRTNSS--------NPGSGQF-----WSGGVHIDEAATAVPPVALPRPNLYMGGAGCSRNRSFWRQTSDPLPER
        APAP+PA +        +SG+   H H  NS+        N  +G F     W   VHI+EAA+  PPVALP  N  +        R        P P +
Subjt:  APAPSPAVSMDSGHRNISSGNSDGHHHRTNSS--------NPGSGQF-----WSGGVHIDEAATAVPPVALPRPNLYMGGAGCSRNRSFWRQTSDPLPER

Query:  YNR----------WPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNG
        Y            WP  +     P  PPP ++ +   W    P P PYY Q+    +GN P  Y+ NDEN  G
Subjt:  YNR----------WPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNG

TYK20998.1 hypothetical protein E5676_scaffold328G00250 [Cucumis melo var. makuwa]1.4e-0632.96Show/hide
Query:  APSPAVSMDSGH--RNISSGNSDGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRS
        AP+      SGH  RN +S NS+ H       T+  N  +G F      S  VHI+EAA   PPV LP PN ++M               G      +  
Subjt:  APSPAVSMDSGH--RNISSGNSDGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRS

Query:  FWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV
        FW   S+P       W   +P       PPP  A+  P+     P P PYY Q+    +GN P  Y+ NDEN  GC I+
Subjt:  FWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV

TrEMBL top hitse value%identityAlignment
A0A0A0K5U2 Uncharacterized protein4.5e-1131.6Show/hide
Query:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHI-------------QPPPPP-------APAPSPAVSMDSGHRNISSGNSDGHHH
        M +NE   + SV +++E GLVK+  +   DP   +K+I K GK A               Q P  P       APAP+PA +        +SG+   H H
Subjt:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHI-------------QPPPPP-------APAPSPAVSMDSGHRNISSGNSDGHHH

Query:  RTNSS--------NPGSGQF-----WSGGVHIDEAATAVPPVALPRPNLYMGGAGCSRNRSFWRQTSDPLPERYNR----------WPEPAPYHWQPQFP
          NS+        N  +G F     W   VHI+EAA+  PPVALP  N  +        R        P P +Y            WP  +     P  P
Subjt:  RTNSS--------NPGSGQF-----WSGGVHIDEAATAVPPVALPRPNLYMGGAGCSRNRSFWRQTSDPLPERYNR----------WPEPAPYHWQPQFP

Query:  PPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV
        PP ++ +   W    P P PYY Q+    +GN P  Y+ NDEN  GC IV
Subjt:  PPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV

A0A5A7UTY4 Uncharacterized protein4.4e-1433.07Show/hide
Query:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAP---------------------SPAVSMD--SGH--RNISSGNS
        M +NE   + SV ++++ GLVK+  +S  DPS  VK+IAK GK A        APAP                     +PA + D  SGH  RN +S NS
Subjt:  MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAP---------------------SPAVSMD--SGH--RNISSGNS

Query:  DGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRSFWRQTSDPLPERYNRWPEPAPY
        + H       T+  N  +G F      S  VHI+EAA   PPV LP PN ++M               G      +  FW   S+P       W   +P 
Subjt:  DGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRSFWRQTSDPLPERYNRWPEPAPY

Query:  HWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV
              PPP  A+  P+     P P PYY Q+    +GN P  Y+ NDEN  GC I+
Subjt:  HWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV

A0A5D3DBX5 Uncharacterized protein6.8e-0732.96Show/hide
Query:  APSPAVSMDSGH--RNISSGNSDGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRS
        AP+      SGH  RN +S NS+ H       T+  N  +G F      S  VHI+EAA   PPV LP PN ++M               G      +  
Subjt:  APSPAVSMDSGH--RNISSGNSDGH----HHRTNSSNPGSGQF-----WSGGVHIDEAATAVPPVALPRPN-LYM---------------GGAGCSRNRS

Query:  FWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV
        FW   S+P       W   +P       PPP  A+  P+     P P PYY Q+    +GN P  Y+ NDEN  GC I+
Subjt:  FWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCAATGAAATATTAGATATAAAGTCAGTAACCATTGATATGGAAGAAGGATTAGTCAAAGTCATTTCAAAATCTCAGATTGACCCATCAACCATCGTCAAATC
CATAGCAAAAATCGGCAAATTAGCACACATTCAGCCACCGCCGCCGCCGGCTCCGGCGCCGTCCCCCGCCGTATCCATGGATTCCGGTCACCGGAACATTTCTTCTGGCA
ATTCAGACGGTCATCACCACAGGACCAATAGCAGCAATCCCGGCTCCGGCCAATTTTGGTCCGGCGGCGTCCACATCGACGAGGCGGCCACGGCCGTCCCGCCGGTGGCA
CTGCCTCGCCCGAACTTGTATATGGGAGGTGCTGGTTGTAGTCGAAACCGGAGTTTTTGGCGGCAAACGTCGGATCCGCTGCCGGAGAGGTATAATCGGTGGCCGGAGCC
GGCTCCTTATCATTGGCAACCACAATTTCCACCGCCGGAGAATGCACTGTGGAACCCTTATTGGAGGTCGTCGGAGCCGCCGCCGCCACCATACTATTATCAACAGCCAC
CGTCACAGATGGGAAATGCTCCGGGGCGTTACATGCTTAACGATGAGAATGTAAATGGATGTAAGATTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCAATGAAATATTAGATATAAAGTCAGTAACCATTGATATGGAAGAAGGATTAGTCAAAGTCATTTCAAAATCTCAGATTGACCCATCAACCATCGTCAAATC
CATAGCAAAAATCGGCAAATTAGCACACATTCAGCCACCGCCGCCGCCGGCTCCGGCGCCGTCCCCCGCCGTATCCATGGATTCCGGTCACCGGAACATTTCTTCTGGCA
ATTCAGACGGTCATCACCACAGGACCAATAGCAGCAATCCCGGCTCCGGCCAATTTTGGTCCGGCGGCGTCCACATCGACGAGGCGGCCACGGCCGTCCCGCCGGTGGCA
CTGCCTCGCCCGAACTTGTATATGGGAGGTGCTGGTTGTAGTCGAAACCGGAGTTTTTGGCGGCAAACGTCGGATCCGCTGCCGGAGAGGTATAATCGGTGGCCGGAGCC
GGCTCCTTATCATTGGCAACCACAATTTCCACCGCCGGAGAATGCACTGTGGAACCCTTATTGGAGGTCGTCGGAGCCGCCGCCGCCACCATACTATTATCAACAGCCAC
CGTCACAGATGGGAAATGCTCCGGGGCGTTACATGCTTAACGATGAGAATGTAAATGGATGTAAGATTGTTTAG
Protein sequenceShow/hide protein sequence
MVANEILDIKSVTIDMEEGLVKVISKSQIDPSTIVKSIAKIGKLAHIQPPPPPAPAPSPAVSMDSGHRNISSGNSDGHHHRTNSSNPGSGQFWSGGVHIDEAATAVPPVA
LPRPNLYMGGAGCSRNRSFWRQTSDPLPERYNRWPEPAPYHWQPQFPPPENALWNPYWRSSEPPPPPYYYQQPPSQMGNAPGRYMLNDENVNGCKIV