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Sed0004960 (gene) of Chayote v1 genome

Gene IDSed0004960
OrganismSechium edule (Chayote v1)
Descriptionthionin-like protein 2
Genome locationLG09:39004873..39007202
RNA-Seq ExpressionSed0004960
SyntenySed0004960
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461039.1 PREDICTED: thionin-like protein 2 [Cucumis melo]3.7e-2043.24Show/hide
Query:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES
        KW  +AWL++ S++   ST F ECY  C + C   P +A   CP  CL+ C++P   ++D ++     QQN  FC+LGCA+S+C+  STK+NP   +VE 
Subjt:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES

Query:  CTNSCNQTCSL
        C +SC+QTCS+
Subjt:  CTNSCNQTCSL

XP_011659556.1 thionin-like protein 2 [Cucumis sativus]3.2e-1942.34Show/hide
Query:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES
        KW  +AWL++ S++   ST F ECY  C + C   P +A   CP  CL+ C++P   ++D ++     QQN  FC+LGCA+S+C+  STK+NP   +V  
Subjt:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES

Query:  CTNSCNQTCSL
        C +SC+QTCS+
Subjt:  CTNSCNQTCSL

XP_022992447.1 thionin-like protein 2 [Cucurbita maxima]1.6e-1845.08Show/hide
Query:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST
        ME CK  AK   +AWLV+ S+T   ST F ECY  C L C   P +A   CP  CL+ C++P   +  HN    + H  Q+NQ FC LGCA+S+C+  ST
Subjt:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST

Query:  KENPDADEVESCTNSCNQTCSL
        ++NP   +V SC +SC++TCS+
Subjt:  KENPDADEVESCTNSCNQTCSL

XP_023547567.1 thionin-like protein 2 [Cucurbita pepo subsp. pepo]2.7e-1844.26Show/hide
Query:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST
        ME CK  AK   +AWLV+ S+T   ST F ECY  C + C   P +A   CP  CL+ C++P   +  HN    + H  Q+NQ FC LGCA+S+C+  ST
Subjt:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST

Query:  KENPDADEVESCTNSCNQTCSL
         +NP  ++V SC +SC++TCS+
Subjt:  KENPDADEVESCTNSCNQTCSL

XP_038899383.1 thionin-like protein 2 [Benincasa hispida]1.1e-1943.24Show/hide
Query:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES
        KW  +AWL++ S++   ST F ECY  C + C   P +A   CP  CL+ C++P   ++++++  H  +QNQ FC+LGCA S+C+  STK+NP   EV +
Subjt:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES

Query:  CTNSCNQTCSL
        C +SC+QTCS+
Subjt:  CTNSCNQTCSL

TrEMBL top hitse value%identityAlignment
A0A0A0K781 Uncharacterized protein1.5e-1942.34Show/hide
Query:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES
        KW  +AWL++ S++   ST F ECY  C + C   P +A   CP  CL+ C++P   ++D ++     QQN  FC+LGCA+S+C+  STK+NP   +V  
Subjt:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES

Query:  CTNSCNQTCSL
        C +SC+QTCS+
Subjt:  CTNSCNQTCSL

A0A1S3CDU4 thionin-like protein 21.8e-2043.24Show/hide
Query:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES
        KW  +AWL++ S++   ST F ECY  C + C   P +A   CP  CL+ C++P   ++D ++     QQN  FC+LGCA+S+C+  STK+NP   +VE 
Subjt:  KWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVES

Query:  CTNSCNQTCSL
        C +SC+QTCS+
Subjt:  CTNSCNQTCSL

A0A498J1L7 Uncharacterized protein7.3e-1438.46Show/hide
Query:  KQEAKWVFVAWLVIGSITMV--KSTQFTECYLPCTLRCV----PFIALCPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPD
        K+  + V VA+LV+G + +    S  F  CY  C + CV      ++ C   CL+ C++P     DH+   +  + N  FC+LGCASS CS LSTK+NP+
Subjt:  KQEAKWVFVAWLVIGSITMV--KSTQFTECYLPCTLRCV----PFIALCPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPD

Query:  ADEVESCTNSCNQTCSL
         D+V  C +SC++TC++
Subjt:  ADEVESCTNSCNQTCSL

A0A6J1GMH5 thionin-like protein 22.2e-1842.98Show/hide
Query:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVND--HNIEFHTAQQNQLFCRLGCASSTCSILSTK
        ME CK  AK   +AWLV+ S+T   ST F ECY  C + C   P +A   CP  CL+ C++P   +++   + + H  Q+NQ FC LGCA+S+C+  ST 
Subjt:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVND--HNIEFHTAQQNQLFCRLGCASSTCSILSTK

Query:  ENPDADEVESCTNSCNQTCSL
        +NP   +V SC +SC++TCS+
Subjt:  ENPDADEVESCTNSCNQTCSL

A0A6J1JZ84 thionin-like protein 27.6e-1945.08Show/hide
Query:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST
        ME CK  AK   +AWLV+ S+T   ST F ECY  C L C   P +A   CP  CL+ C++P   +  HN    + H  Q+NQ FC LGCA+S+C+  ST
Subjt:  MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRC--VPFIAL--CPDYCLRGCVMPGARVNDHNI---EFHTAQQNQLFCRLGCASSTCSILST

Query:  KENPDADEVESCTNSCNQTCSL
        ++NP   +V SC +SC++TCS+
Subjt:  KENPDADEVESCTNSCNQTCSL

SwissProt top hitse value%identityAlignment
A8MRP4 Thionin-like protein 29.0e-0931.19Show/hide
Query:  LVIGSI---TMVKSTQFTECYLPCTLRC-----VPFIALCPDYCLRGCVMPGA--RVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESC
        +VIG++   T  +   F ECY  C + C      P    CP  C + C+   +   V+ +NI+     ++  FC+LGCA+  C  LS+ +NP+ + V +C
Subjt:  LVIGSI---TMVKSTQFTECYLPCTLRC-----VPFIALCPDYCLRGCVMPGA--RVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESC

Query:  TNSCNQTCS
         +SC+  C+
Subjt:  TNSCNQTCS

Arabidopsis top hitse value%identityAlignment
AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.6.4e-1031.19Show/hide
Query:  LVIGSI---TMVKSTQFTECYLPCTLRC-----VPFIALCPDYCLRGCVMPGA--RVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESC
        +VIG++   T  +   F ECY  C + C      P    CP  C + C+   +   V+ +NI+     ++  FC+LGCA+  C  LS+ +NP+ + V +C
Subjt:  LVIGSI---TMVKSTQFTECYLPCTLRC-----VPFIALCPDYCLRGCVMPGA--RVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESC

Query:  TNSCNQTCS
         +SC+  C+
Subjt:  TNSCNQTCS

AT1G12672.1 unknown protein3.6e-0542.5Show/hide
Query:  NQLFCRLGCASSTCSILSTKENPDADEVESCTNSCNQTCS
        N  +C+LGC++  C+ LS+ +NP+ D+V  C +SC+  CS
Subjt:  NQLFCRLGCASSTCSILSTKENPDADEVESCTNSCNQTCS

AT1G12672.2 unknown protein3.0e-0734.38Show/hide
Query:  CLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESCTNSCNQTCS
        C++ C+ P +   D   E +    N  +C+LGC++  C+ LS+ +NP+ D+V  C +SC+  CS
Subjt:  CLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESCTNSCNQTCS

AT5G36910.1 thionin 2.26.8e-0442.86Show/hide
Query:  FCRLGCASSTCSILSTKENPD-----ADEVESCTNSCNQTCS
        +C+LGCASS C  L+T +N D     ++ VE CT +C+  C+
Subjt:  FCRLGCASSTCSILSTKENPD-----ADEVESCTNSCNQTCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGTGCAAGCAAGAAGCAAAATGGGTATTCGTGGCGTGGCTGGTGATAGGCTCGATCACGATGGTTAAGTCGACTCAATTCACCGAGTGCTACTTGCCTTGCAC
CCTCAGATGTGTCCCTTTTATAGCACTATGTCCCGATTATTGCTTGCGTGGCTGCGTCATGCCCGGCGCGCGAGTCAACGACCACAACATTGAATTCCATACCGCTCAAC
AAAATCAACTCTTCTGTCGGCTCGGATGCGCGTCTTCCACTTGTTCCATCCTTAGCACCAAGGAAAATCCAGATGCCGATGAAGTGGAGTCTTGTACGAATTCCTGCAAC
CAAACATGCTCCCTCACTTATCCAAAATAA
mRNA sequenceShow/hide mRNA sequence
GTATAGTAGACCGTTGGTTACCAACCACGTGGAATGATAATGTGGAAAAATTGGAGGTATATACTTAGGCTTGATATGTGATAAAAGAAAGGCATATCATAATTAATAAA
AATTAGAAACTATGGAGAGGTGCAAGCAAGAAGCAAAATGGGTATTCGTGGCGTGGCTGGTGATAGGCTCGATCACGATGGTTAAGTCGACTCAATTCACCGAGTGCTAC
TTGCCTTGCACCCTCAGATGTGTCCCTTTTATAGCACTATGTCCCGATTATTGCTTGCGTGGCTGCGTCATGCCCGGCGCGCGAGTCAACGACCACAACATTGAATTCCA
TACCGCTCAACAAAATCAACTCTTCTGTCGGCTCGGATGCGCGTCTTCCACTTGTTCCATCCTTAGCACCAAGGAAAATCCAGATGCCGATGAAGTGGAGTCTTGTACGA
ATTCCTGCAACCAAACATGCTCCCTCACTTATCCAAAATAATTCCTTTTTATTCATTTATTTACTTTTGGTATAAAGTTCTACTAATGTTGTACTATATTTACTTATCAT
CAATCAATTTCACATTTTATTACCAAGAAAGAAA
Protein sequenceShow/hide protein sequence
MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRCVPFIALCPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESCTNSCN
QTCSLTYPK