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Sed0004967 (gene) of Chayote v1 genome

Gene IDSed0004967
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23-like
Genome locationLG03:16775321..16775509
RNA-Seq ExpressionSed0004967
SyntenySed0004967
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]2.8e-1172.58Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        MEMK  A AAFI V ASL+MVLAS+E A+PAPGPSS  SATLPVVG  +GA+A +LIAYCLQ
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]5.3e-1075Show/hide
Query:  AVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        A AAFI V+ASL+MVLAS+E A+PAPGPSS+ASATLPVVG  +GA+A +LIAYCLQ
Subjt:  AVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
OVA12266.1 hypothetical protein BVC80_1779g40 [Macleaya cordata]6.7e-0548.39Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        M+MKK++ A  I V+AS+N  LA++E  APAPGP+S+A  T+PV+G+ VGA+  +  A+ +Q
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]1.4e-0560.66Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        ME+KK++ A  IV +ASL+ V+A+NE  APAPGPSS ASATLPVVG+ VGA+  +  AY L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]6.1e-0660.66Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        ME+KK+++A  IV +ASL+ V+A+NE  APAPGPSS ASATLPVVG+ VGA+  +  AY L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)7.2e-0554.84Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        M+MKK++  A +V +AS++ VLAS++  APAPGPSS ASA LPV G+ VGA+  +  AY LQ
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
A0A200QP69 Uncharacterized protein3.2e-0548.39Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        M+MKK++ A  I V+AS+N  LA++E  APAPGP+S+A  T+PV+G+ VGA+  +  A+ +Q
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
A0A2P5CAP7 Uncharacterized protein6.5e-0660.66Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        ME+KK++ A  IV +ASL+ V+A+NE  APAPGPSS ASATLPVVG+ VGA+  +  AY L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
A0A2P5F1L3 Uncharacterized protein2.9e-0660.66Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        ME+KK+++A  IV +ASL+ V+A+NE  APAPGPSS ASATLPVVG+ VGA+  +  AY L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
A0A5D3E271 Arabinogalactan peptide 23-like1.4e-1172.58Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
        MEMK  A AAFI V ASL+MVLAS+E A+PAPGPSS  SATLPVVG  +GA+A +LIAYCLQ
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.8e-0549.18Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+ASA LP +G+ VGA+  +L +Y L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
Arabidopsis top hitse value%identityAlignment
AT3G57690.1 arabinogalactan protein 231.3e-0649.18Show/hide
Query:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL
        MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+ASA LP +G+ VGA+  +L +Y L
Subjt:  MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAATGAACCGGCAGCGCCTGCACCCGGCCCATCAAGCAG
CGCCTCCGCTACCTTGCCCGTCGTTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCCTACTGCCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAATGAACCGGCAGCGCCTGCACCCGGCCCATCAAGCAG
CGCCTCCGCTACCTTGCCCGTCGTTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCCTACTGCCTTCAGTAA
Protein sequenceShow/hide protein sequence
MEMKKLAVAAFIVVSASLNMVLASNEPAAPAPGPSSSASATLPVVGAFVGAAATTLIAYCLQ