; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0004980 (gene) of Chayote v1 genome

Gene IDSed0004980
OrganismSechium edule (Chayote v1)
DescriptionHIG1 domain-containing protein
Genome locationLG08:820965..823914
RNA-Seq ExpressionSed0004980
SyntenySed0004980
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7838353.1 RING-H2 finger protein ATL48-like [Senna tora]6.1e-3085.9Show/hide
Query:  EPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS
        +P L+EFF  KKRVRNP VPIGALITAGVLTAGLISFRQGNSHLGQKLMR RVVVQG TVALMVG+AYYYGDNPW  S
Subjt:  EPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS

XP_018831560.1 RING-H2 finger protein ATL48-like [Juglans regia]1.8e-2982.28Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M  AEP+L++FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV QG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

XP_028781744.1 LOW QUALITY PROTEIN: RING-H2 finger protein ATL48-like [Prosopis alba]6.1e-3081.71Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS
        M A +  L+EFF+ KKRVRNPLVP+GA ITAGVLTAGLISFRQGNSHLGQKLMR RVVVQG TVALMVG+AYYYGDNPW  S
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS

XP_031276990.1 RING-H2 finger protein ATL48-like [Pistacia vera]1.0e-2981.01Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        MVA EP  ++ ++ KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNSHLGQKLMR RVVVQG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

XP_040985753.1 RING-H2 finger protein ATL48-like [Juglans microcarpa x Juglans regia]2.3e-2982.28Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M  AEP+L+ FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV QG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

TrEMBL top hitse value%identityAlignment
A0A2I4FIT1 RING-H2 finger protein ATL48-like8.6e-3082.28Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M  AEP+L++FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV QG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

A0A2N9FS75 HIG1 domain-containing protein1.1e-2982.28Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M  AEP+L+EFF+ KKRVRNPLVP+GA +TAGVLTAGLISFRQGNS LGQ LMR RVVVQG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

A0A2P2KAW7 HIG1 domain-containing protein1.1e-2979.27Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS
        M AAEP+L++ F+ KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ LMR RVVVQG TVALMVG+A+YYGDNPW +S
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS

A0A2P5CJ67 Hypoxia induced protein, domain containing protein1.5e-2981.01Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M +AEPD ++FF+ KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ LMR RVV QG TVALMVG+AYYYGDNPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

A0A5N6RP69 HIG1 domain-containing protein1.5e-2984.81Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW
        M  A P+LDEFF  KKRVRNPLVP+GALITAGVLTAGLISFRQGNS LGQKLMR RVVVQG TVALMVG+AYYYG NPW
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPW

SwissProt top hitse value%identityAlignment
Q2GMG9 Respiratory supercomplex factor 1, mitochondrial3.4e-0739.68Show/hide
Query:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDN
        +K    PLVPIG ++T    T    + R+G+ H  Q++ R RV  QG TV  MVG   YY ++
Subjt:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDN

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial3.4e-0743.1Show/hide
Query:  PLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNP
        PLVP+G L T G L     + R GN     ++   RV  QG+TVA ++G A YYG +P
Subjt:  PLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNP

Q7X843 RING-H2 finger protein ATL481.7e-3075.31Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNR
        M + EPD+++ F  KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ LMR RVVVQG TVALMVG+ YYYGDNPW +
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNR

Q9BW72 HIG1 domain family member 2A, mitochondrial5.2e-0851.85Show/hide
Query:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMV
        +K   NP+VPIG L TA  LT GL SF +GNS   Q +MR R+  QG TVA ++
Subjt:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMV

Q9CQJ1 HIG1 domain family member 2A2.0e-0750Show/hide
Query:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVT-VALMVGSA
        +K   NP+VPIG L TA  LT GL  F +G SH  Q +MR R+  QG T VA+++G A
Subjt:  KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVT-VALMVGSA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein1.2e-3175.31Show/hide
Query:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNR
        M + EPD+++ F  KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ LMR RVVVQG TVALMVG+ YYYGDNPW +
Subjt:  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCCGCAGAACCCGATTTGGACGAGTTCTTCGATGGGAAGAAGCGCGTTAGAAATCCTCTGGTTCCAATTGGTGCACTCATCACAGCTGGAGTTCTTACAGCAGG
GTTGATCAGTTTTCGGCAAGGCAACTCTCACTTGGGACAGAAGCTAATGAGAGGTCGGGTGGTCGTCCAAGGTGTGACGGTGGCGCTTATGGTTGGCTCTGCCTACTACT
ATGGGGACAATCCATGGAATCGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
GTAAATAATTATTTCGTCAATCTTTTGGTCCAAATTCAAAACCCTAATTTAGTTTTCTGCCTTTTGTCATGCACCAGATCGACGGTATACTTTGATCTTCCGATTTCAAA
GAATCGTAAATTTCTTGAATTAATCGTAGATATTCAAAAAGATGGTCGCCGCAGAACCCGATTTGGACGAGTTCTTCGATGGGAAGAAGCGCGTTAGAAATCCTCTGGTT
CCAATTGGTGCACTCATCACAGCTGGAGTTCTTACAGCAGGGTTGATCAGTTTTCGGCAAGGCAACTCTCACTTGGGACAGAAGCTAATGAGAGGTCGGGTGGTCGTCCA
AGGTGTGACGGTGGCGCTTATGGTTGGCTCTGCCTACTACTATGGGGACAATCCATGGAATCGAAGCTAGACATTATAATGTGCATTATCAACAGCAGGAGATCTGTGTA
TCATTTAAATTCTCAGACTCGAAACTAAATTCCATCGCCTCTTTGCCGATCCATGCCCTGTTTTTATTTTACTGCATAATGGGCAGATCAAATTGCATCACTGAGTACTA
TTGTTCACTTAACCTAGCCTTAGAGGAGTCTGTCTAAGCTTCTCACAACAGTGGGGGATGCTATTGACATAGACTCTGAACTTATTGATTTGACTCAATTATGGGTCTAT
AATGTTGTTACATCAATATTCCTCAATTAAATAGCAAAAAGATAACAATTTCTTGTTTGGCCCAA
Protein sequenceShow/hide protein sequence
MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS