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Sed0004988 (gene) of Chayote v1 genome

Gene IDSed0004988
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationLG03:7201431..7202078
RNA-Seq ExpressionSed0004988
SyntenySed0004988
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4669.33Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNS RRSPRR A P+ K       SRSNTL+ LF SSPPYD +  EI +TV AA  
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--

Query:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV ++ED  I P G++PGSPRPGWTGFRYK LLRKTWRP+LAGIPE
Subjt:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-4770Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNS RRSPRRRA P+ K       SRSNTL+ LF SSPPYD +  EI +TV AA  
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--

Query:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV ++ED  I P G++PGSPRPGWTGFRYK LLRKTWRP+LAGIPE
Subjt:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

XP_011655483.1 uncharacterized protein LOC105435544 [Cucumis sativus]1.0e-4566.67Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNSGRRSPRRR+ PENK+       SRSNTL+ LF SSPPY GT  +++QT   AP
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP

Query:  V--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
                  + E+  +   G+NPGSPRPGWTGFRYK LLRKTWRPVL GIPE
Subjt:  V--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]1.4e-4770Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNS RRSPRRRA P+ K       SRSNTL+ LF SSPPYD +  EI +TV AA  
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--

Query:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV ++ED  I P G++PGSPRPGWTGFRYK LLRKTWRP+LAGIPE
Subjt:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

XP_038875200.1 uncharacterized protein LOC120067717 [Benincasa hispida]2.7e-4670.2Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP-
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNSGRRSP RRA PE K       SRSNTL+ LF SSPPY  T  +I++T  AAP 
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP-

Query:  -----VLKD-EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
             V K+ ED  +  AG+NPGSPRPGWTGFRYK LLRKTWRPVLAGIPE
Subjt:  -----VLKD-EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein5.0e-4666.67Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNSGRRSPRRR+ PENK+       SRSNTL+ LF SSPPY GT  +++QT   AP
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP

Query:  V--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
                  + E+  +   G+NPGSPRPGWTGFRYK LLRKTWRPVL GIPE
Subjt:  V--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

A0A5D3BMD8 Uncharacterized protein1.0e-4366.45Show/hide
Query:  MASLFRFKFLPTH-CAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRR-RASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPA
        MASL +FK LPTH C  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNSGRRSPRR RA PENK        SRSNTL+ LF SSPPY GT  ++++T   
Subjt:  MASLFRFKFLPTH-CAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRR-RASPENKHS------SRSNTLRHLFGSSPPYDGTRAEIYQTVPA

Query:  APV--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
        AP          + E+ R+   G+NPGSPRPGWTGFRYK LLRKTWRPVL GIPE
Subjt:  APV--------LKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

A0A6J1DFV6 uncharacterized protein LOC1110200649.4e-4567.55Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA---
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNSGRRSPRRRA P+ K      +RSNTL+ LF SSPPYDG   EI +    A   
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA---

Query:  ----PVLKD-EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV K+ ED  +   G+ PGSPRP WTGFRYK LLRKTWRPVLAGIPE
Subjt:  ----PVLKD-EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633731.1e-4568Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNS RRSPRRRA P+ K       SRSNTL+ LF SSPPYD +  EI +TV AA  
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--

Query:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV ++ED  I P  ++PGSPRPGWTGFR+K LLRKTWRP+LA IPE
Subjt:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704938.0e-4467.33Show/hide
Query:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--
        MASL +FK LPTHC  AQ+PTLSPRTSPL+HLRRRKTTLRMLLTRNS     RRRA P+ K       SRSNTL+ LF SSPPYD +  EI +TV AA  
Subjt:  MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHS-----SRSNTLRHLFGSSPPYDGTRAEIYQTVPAA--

Query:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
            PV ++ED  I P G++PGSPRPGWTGFRYK LLRKTWRP+LAGIPE
Subjt:  ----PVLKDEDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown3.6e-1240.99Show/hide
Query:  SLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGR-RSPR-RRASPENKHSSR------SNTLRHLFGSSPPYD----------GTRA
        SL +FK L THC+   T   SP  SP++HLRRRK TLR+LLTR+S R R P  +    E+K + +      S  L  LF SSPP++          GT+ 
Subjt:  SLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGR-RSPR-RRASPENKHSSR------SNTLRHLFGSSPPYD----------GTRA

Query:  EI--YQTVPAAPVLKD----EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
        E+   + VP   V  +    E+   R  GFN GS RP  +      LLR++WRPVL  IPE
Subjt:  EI--YQTVPAAPVLKD----EDRRIRPAGFNPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE

AT1G68430.1 unknown protein8.8e-1140.13Show/hide
Query:  MASLFRFKFLPTHC-AAAQTPTL--SPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHSSRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP--V
        MA+L RFKFL T C  AAQ+PT   SPRTSPL+ LRR+KTTL+MLL+  S  R  ++     +        L+ LF SS     + AE  Q     P   
Subjt:  MASLFRFKFLPTHC-AAAQTPTL--SPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHSSRSNTLRHLFGSSPPYDGTRAEIYQTVPAAP--V

Query:  LKDEDRRIRPAGFNPGS--------PRPGWTGFRYKSLLRKTWRPVLAGIPE
         K+E      A  N  S          P W GF  K LL++ WRP L  I E
Subjt:  LKDEDRRIRPAGFNPGS--------PRPGWTGFRYKSLLRKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related1.5e-0733.73Show/hide
Query:  MASLFRFKFLPTH----CAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRR----------SPRRRASPENK----HSSRSNTLRHLF--GSSPPY-
        ++ L +FK    H     + A +PT+SP  SP+ +LRRRK TLRML  ++S  R          SP    +  NK    H +    LR L     SPPY 
Subjt:  MASLFRFKFLPTH----CAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRR----------SPRRRASPENK----HSSRSNTLRHLF--GSSPPY-

Query:  -----DGTRAEIYQTVPAAPVLKDEDRRIRPAGF-NPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE
             DG   E  +  P       + R +    F + GS +     FR + +LRK WRPVL  IPE
Subjt:  -----DGTRAEIYQTVPAAPVLKDEDRRIRPAGF-NPGSPRPGWTGFRYKSLLRKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGCTTTTCAGATTCAAGTTCCTTCCCACTCACTGCGCCGCCGCTCAGACTCCAACCTTGAGCCCACGAACCAGCCCTCTGCTTCACCTCCGCCGCCGCAAAAC
CACTCTGCGTATGCTTCTCACTCGAAACTCCGGCCGCCGTTCCCCTCGCCGCCGCGCCTCGCCGGAAAACAAGCATTCCTCACGGTCCAACACCTTGAGGCATTTGTTCG
GTTCCTCCCCGCCCTATGACGGAACCCGCGCAGAGATTTACCAAACGGTTCCGGCGGCTCCGGTTCTTAAGGACGAGGATCGTCGGATTCGCCCCGCCGGTTTTAATCCC
GGTTCTCCTCGACCGGGTTGGACCGGTTTTCGGTACAAGTCATTGCTCCGGAAAACCTGGCGGCCGGTCCTTGCCGGAATCCCTGAGTAA
mRNA sequenceShow/hide mRNA sequence
GCCATGAAAATGATCTTTGAAATTCCCCTGTTCAATCATTATGAATTTTCAAAAAATTTCAAAGGCCTTCCCAGTTTGTTTCTCTCTGTTAAGTCCACAGAATCCACAGC
CACCATTCAATTGGATTGAACTTTTCATCATCCATGGCCTCGCTTTTCAGATTCAAGTTCCTTCCCACTCACTGCGCCGCCGCTCAGACTCCAACCTTGAGCCCACGAAC
CAGCCCTCTGCTTCACCTCCGCCGCCGCAAAACCACTCTGCGTATGCTTCTCACTCGAAACTCCGGCCGCCGTTCCCCTCGCCGCCGCGCCTCGCCGGAAAACAAGCATT
CCTCACGGTCCAACACCTTGAGGCATTTGTTCGGTTCCTCCCCGCCCTATGACGGAACCCGCGCAGAGATTTACCAAACGGTTCCGGCGGCTCCGGTTCTTAAGGACGAG
GATCGTCGGATTCGCCCCGCCGGTTTTAATCCCGGTTCTCCTCGACCGGGTTGGACCGGTTTTCGGTACAAGTCATTGCTCCGGAAAACCTGGCGGCCGGTCCTTGCCGG
AATCCCTGAGTAATGGATGTTTTTTTTTTAATTTCCCTATCTTTTTAACCCTTTCCTCTAATTGATTTTAAAAATATATATCTTATCTAATATTTTCT
Protein sequenceShow/hide protein sequence
MASLFRFKFLPTHCAAAQTPTLSPRTSPLLHLRRRKTTLRMLLTRNSGRRSPRRRASPENKHSSRSNTLRHLFGSSPPYDGTRAEIYQTVPAAPVLKDEDRRIRPAGFNP
GSPRPGWTGFRYKSLLRKTWRPVLAGIPE