CuGenDBv2

Gene ID	Sed0005033
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	LG06:5632001..5632318
RNA-Seq Expression	Sed0005033
Synteny	Sed0005033
Gene Ontology terms	GO:0071897 - DNA biosynthetic process (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0006952 - defense response (biological process) GO:0007165 - signal transduction (biological process) GO:0015074 - DNA integration (biological process) GO:0009062 - fatty acid catabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0043531 - ADP binding (molecular function) GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0003953 - NAD+ nucleosidase activity (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.9e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KCIF+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

4.3e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

4.3e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

4.3e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

4.3e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP18 Putative gag-pol polyprotein

9.3e-37

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KCIF+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.1e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

A0A5A7UB25 Putative gag-pol polyprotein

2.1e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

A0A5D3CTV2 Putative polyprotein

2.1e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

A0A5D3DNU1 Putative gag-pol polyprotein

2.1e-36

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL
        NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.4e-20

48.54

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Query:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAI--GFKTPQELWQGSPPDLSQLNVFGCLAYAHC--KEGKLDPRAKKCIFLGYPEGVKGY
        M RT+ E+ R M+S +KL ++FWGEAV TA Y+INR PS A+    KTP E+W    P L  L VFG   Y H   K+GK D ++ K IF+GY     G+
Subjt:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAI--GFKTPQELWQGSPPDLSQLNVFGCLAYAHC--KEGKLDPRAKKCIFLGYPEGVKGY

Query:  KLW
        KLW
Subjt:  KLW

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-26

50.98

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Query:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHC---KEGKLDPRAKKCIFLGYPEGVKGYK
        MNRT++E+VR ML  +KLP++FWGEAV TACY+INRSPS  + F+ P+ +W       S L VFGC A+AH    +  KLD ++  CIF+GY +   GY+
Subjt:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHC---KEGKLDPRAKKCIFLGYPEGVKGYK

Query:  LW
        LW
Subjt:  LW

P92512 Uncharacterized mitochondrial protein AtMg00710

5.3e-21

57.83

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Query:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKK
        MNRT++E+VR ML    LP+TF  +A  TA +IIN+ PSTAI F  P E+W  S P  S L  FGC+AY HC EGKL PRAKK
Subjt:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.7e-11

34.07

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Query:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCK---EGKLDPRAKKCIFLGY
        +R ++E    +LS + +P+T+W  A + A Y+INR P+  +  ++P +   G PP+  +L VFGC  Y   +     KL+ ++K+C F+GY
Subjt:  NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCK---EGKLDPRAKKCIFLGY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.7e-22

57.83

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Query:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKK
        MNRT++E+VR ML    LP+TF  +A  TA +IIN+ PSTAI F  P E+W  S P  S L  FGC+AY HC EGKL PRAKK
Subjt:  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKK

Sequences

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CDS sequence

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ATGAATAGAACCTTGATGGAGAGAGTAAGGTGTATGTTGTCTTGGTCAAAGCTTCCTCAAACGTTTTGGGGTGAAGCGGTGACCACGGCTTGTTATATAATCAATAGGAG
TCCTTCCACCGCCATAGGTTTTAAAACACCTCAAGAACTATGGCAAGGTAGTCCCCCCGATCTATCTCAATTAAATGTTTTTGGATGTCTAGCCTATGCCCATTGCAAAG
AGGGTAAGTTAGATCCAAGAGCTAAAAAGTGTATATTCTTAGGATACCCCGAAGGTGTTAAAGGCTATAAATTGTGGTGCCTAGGTCAAGATGCTTAA

mRNA sequence

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Protein sequence

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MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCLGQDA

Sed0005033 (gene) of Chayote v1 genome